Variant report

Variant	rs6908143
Chromosome Location	chr6:44641615-44641616
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr6:44636396..44638850-chr6:44639424..44641706,2	K562	blood:
2	chr6:44640493..44642311-chr6:44662709..44665679,2	MCF-7	breast:
3	chr6:44635305..44638850-chr6:44639424..44643033,3	K562	blood:
4	chr6:44639630..44642555-chr6:44702558..44704571,3	MCF-7	breast:
5	chr6:44626035..44627596-chr6:44640686..44642713,2	MCF-7	breast:
6	chr6:44628498..44636418-chr6:44638711..44643963,7	MCF-7	breast:

Extended variants
information (count: 9 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:9)

rs_ID	r²[population]
rs13205134	1.00[EUR][1000 genomes]
rs13209913	1.00[EUR][1000 genomes]
rs16872371	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs34191706	1.00[EUR][1000 genomes]
rs6926713	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs6927788	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs6928345	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs6934814	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs71564620	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]

No data

Chromatin state (count:28 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:44636000-44642200	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
2	chr6:44636400-44642000	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
3	chr6:44636400-44647400	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
4	chr6:44636400-44649200	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
5	chr6:44636600-44647400	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
6	chr6:44637400-44644000	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
7	chr6:44637400-44647400	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
8	chr6:44638400-44644800	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
9	chr6:44638600-44641800	Enhancers	ES-I3 Cell Line	embryonic stem cell
10	chr6:44638600-44642000	Enhancers	HSMM	muscle
11	chr6:44638600-44645000	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
12	chr6:44639200-44642800	Enhancers	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
13	chr6:44639200-44647600	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
14	chr6:44639400-44647400	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
15	chr6:44639800-44643000	Enhancers	HUES6 Cell Line	embryonic stem cell
16	chr6:44640000-44644400	Enhancers	HMEC	breast
17	chr6:44640000-44644800	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
18	chr6:44640200-44645000	Enhancers	NHEK	skin
19	chr6:44640600-44642000	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
20	chr6:44640800-44641800	Weak transcription	Placenta	Placenta
21	chr6:44640800-44642800	Weak transcription	H9 Cell Line	embryonic stem cell
22	chr6:44641000-44641800	Weak transcription	Muscle Satellite Cultured Cells	--
23	chr6:44641000-44647400	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
24	chr6:44641000-44647400	Weak transcription	HSMMtube	muscle
25	chr6:44641200-44642200	Weak transcription	iPS-20b Cell Line	embryonic stem cell
26	chr6:44641200-44642400	Weak transcription	HUES64 Cell Line	embryonic stem cell
27	chr6:44641600-44642200	Enhancers	Primary hematopoietic stem cells short term culture	blood
28	chr6:44641600-44642400	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived

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