Variant report

Variant	rs71564620
Chromosome Location	chr6:44643153-44643154
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr6:44642958..44645763-chr6:44648407..44650209,2	K562	blood:
2	chr6:44642958..44644936-chr6:44648407..44651154,2	K562	blood:
3	chr6:44628498..44636418-chr6:44638711..44643963,7	MCF-7	breast:

Extended variants
information (count: 9 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:9)

rs_ID	r²[population]
rs13205134	1.00[EUR][1000 genomes]
rs13209913	1.00[EUR][1000 genomes]
rs16872371	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs34191706	1.00[EUR][1000 genomes]
rs6908143	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs6926713	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs6927788	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs6928345	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs6934814	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]

No data

Chromatin state (count:21 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:44636400-44647400	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
2	chr6:44636400-44649200	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
3	chr6:44636600-44647400	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
4	chr6:44637400-44644000	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
5	chr6:44637400-44647400	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
6	chr6:44638400-44644800	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
7	chr6:44638600-44645000	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
8	chr6:44639200-44647600	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
9	chr6:44639400-44647400	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
10	chr6:44640000-44644400	Enhancers	HMEC	breast
11	chr6:44640000-44644800	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
12	chr6:44640200-44645000	Enhancers	NHEK	skin
13	chr6:44641000-44647400	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
14	chr6:44641000-44647400	Weak transcription	HSMMtube	muscle
15	chr6:44641800-44645200	Enhancers	Muscle Satellite Cultured Cells	--
16	chr6:44642600-44643200	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
17	chr6:44642600-44644000	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
18	chr6:44642800-44644000	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
19	chr6:44642800-44644600	Weak transcription	Placenta	Placenta
20	chr6:44642800-44646000	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
21	chr6:44643000-44645400	Enhancers	HSMM	muscle

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