Variant report

Variant	rs6908458
Chromosome Location	chr6:100707145-100707146
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:0)
CpG islands
(count:0)
Chromatin interactive
region (count:8)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

No data

(count:8 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type
1	chr6:100675649..100678406-chr6:100706884..100708922,2	K562	blood:
2	chr6:100675649..100678323-chr6:100706693..100708384,2	K562	blood:
3	chr6:100704664..100707778-chr6:100709218..100711307,3	K562	blood:
4	chr6:100705901..100707480-chr6:100836775..100838969,2	K562	blood:
5	chr6:100704664..100707392-chr6:100709218..100711307,2	K562	blood:
6	chr6:100676458..100678188-chr6:100705698..100707425,2	MCF-7	breast:
7	chr6:100678985..100681308-chr6:100704669..100708291,4	K562	blood:
8	chr6:100679808..100682581-chr6:100705982..100708291,2	K562	blood:

No data

Extended variants
information (count: 70 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:69)

rs_ID	r²[population]
rs10499030	0.88[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs11756118	0.88[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs12111503	0.88[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs12524392	0.81[AMR][1000 genomes];0.89[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs12528089	0.87[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs12529274	0.86[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs13190996	0.82[AMR][1000 genomes];0.96[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs13193512	0.88[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs13201666	0.88[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs13206155	0.88[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs13211600	0.87[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs13211682	0.82[AMR][1000 genomes];0.95[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs1354684	0.88[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs1506086	0.88[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs1506089	0.88[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs1506090	0.88[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs1827854	0.88[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs1827855	0.87[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs1827856	0.87[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs1827857	0.87[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs2135355	0.88[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs2135356	0.88[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs2281425	0.87[AMR][1000 genomes];0.83[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs4129688	0.87[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs4357140	0.87[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs4357144	0.87[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs4373369	0.87[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs4576252	0.87[AMR][1000 genomes];0.92[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs6570642	0.86[CEU][hapmap];0.84[CHB][hapmap];0.86[JPT][hapmap];0.88[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs6570643	0.84[CEU][hapmap];0.86[CHB][hapmap];0.85[JPT][hapmap];0.88[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs6914044	0.86[AMR][1000 genomes];0.89[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs6915780	0.97[AMR][1000 genomes];0.99[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs6930495	0.91[AMR][1000 genomes];0.90[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs6933158	0.88[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs6941605	0.82[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs71539016	0.86[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs7742131	0.86[AMR][1000 genomes];0.89[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs7762259	0.87[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs7763138	0.86[CEU][hapmap];0.84[CHB][hapmap];0.86[JPT][hapmap];0.88[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs7764243	0.86[CEU][hapmap];0.84[CHB][hapmap];0.86[JPT][hapmap];0.88[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs7765823	0.87[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs8180548	0.98[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9321986	0.89[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs9376816	0.97[AMR][1000 genomes];0.99[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs9376817	0.97[AMR][1000 genomes];0.99[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs9376853	0.88[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs9386068	0.86[AMR][1000 genomes];0.97[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs9386079	0.85[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs9386080	0.88[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs9390191	0.89[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs9390192	0.82[AMR][1000 genomes];0.97[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs9390205	0.88[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs9390217	0.88[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs9390218	0.88[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs9390220	0.88[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs9390221	0.87[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs9390223	0.81[AMR][1000 genomes];0.95[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs9390229	0.88[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs9399491	0.93[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs9399504	0.88[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs9403561	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs9403582	0.89[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs9403583	0.89[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs9403591	0.87[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs9403594	0.87[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs9403595	0.80[EUR][1000 genomes]
rs9403602	0.88[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs9403608	0.85[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs9497097	0.81[AMR][1000 genomes];0.95[EUR][1000 genomes];0.87[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv17003	chr6:100706818-100707478	Weak transcription Enhancers	Chromatin interactive region	n/a	inside rSNPs	diseases

No data

Chromatin state (count:12 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:100702400-100708800	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
2	chr6:100703800-100715600	Weak transcription	HSMM	muscle
3	chr6:100704200-100715600	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
4	chr6:100706400-100707200	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
5	chr6:100706400-100707600	Enhancers	Dnd41	blood
6	chr6:100706400-100707600	Enhancers	K562	blood
7	chr6:100706400-100708400	Weak transcription	Muscle Satellite Cultured Cells	--
8	chr6:100706400-100708800	Weak transcription	A549	lung
9	chr6:100706400-100709000	Weak transcription	HUVEC	blood vessel
10	chr6:100706400-100714400	Weak transcription	Osteobl	bone
11	chr6:100706400-100716200	Weak transcription	Pancreatic Islets	Pancreatic Islet
12	chr6:100706600-100707600	Weak transcription	iPS-15b Cell Line	embryonic stem cell

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