Variant report

Variant	rs8180548
Chromosome Location	chr6:100704146-100704147
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr6:100698877..100701745-chr6:100703701..100705218,2	K562	blood:

Extended variants
information (count: 69 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:69)

rs_ID	r²[population]
rs10499030	0.88[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs11756118	0.87[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs12111503	0.87[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs12524392	0.88[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs12528089	0.87[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs12529274	0.86[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs13190996	0.84[AMR][1000 genomes];0.95[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs13193512	0.87[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs13201666	0.87[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs13206155	0.87[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs13211600	0.87[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs13211682	0.84[AMR][1000 genomes];0.95[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs1354684	0.87[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs1506086	0.87[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs1506089	0.87[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs1506090	0.87[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs1827854	0.87[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs1827855	0.87[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs1827856	0.87[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs1827857	0.87[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs2135355	0.87[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs2135356	0.87[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs2281425	0.86[AMR][1000 genomes];0.84[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs4129688	0.87[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs4357140	0.87[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs4357144	0.87[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs4373369	0.87[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs4576252	0.85[AMR][1000 genomes];0.90[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs6570642	0.84[CEU][hapmap];0.83[CHB][hapmap];0.86[JPT][hapmap];0.87[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs6570643	0.84[CEU][hapmap];0.85[CHB][hapmap];0.85[JPT][hapmap];0.87[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs6908458	0.98[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6914044	0.85[AMR][1000 genomes];0.88[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs6915780	0.95[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs6930495	0.89[AMR][1000 genomes];0.92[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs6933158	0.87[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs6941605	0.81[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs71539016	0.85[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs7742131	0.85[AMR][1000 genomes];0.88[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs7762259	0.87[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs7763138	0.85[CEU][hapmap];0.83[CHB][hapmap];0.86[JPT][hapmap];0.87[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs7764243	0.85[CEU][hapmap];0.83[CHB][hapmap];0.86[JPT][hapmap];0.87[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs7765823	0.87[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs9321986	0.88[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs9376816	0.95[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs9376817	0.95[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs9376853	0.87[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs9386068	0.85[AMR][1000 genomes];0.96[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs9386079	0.84[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs9386080	0.87[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs9390191	0.88[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs9390192	0.84[AMR][1000 genomes];0.96[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs9390205	0.87[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs9390217	0.87[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs9390218	0.87[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs9390220	0.87[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs9390221	0.87[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs9390223	0.82[AMR][1000 genomes];0.95[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs9390229	0.87[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs9399491	0.91[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs9399504	0.87[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs9403561	0.98[AMR][1000 genomes];0.99[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs9403582	0.88[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs9403583	0.88[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs9403591	0.87[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs9403594	0.87[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs9403595	0.80[EUR][1000 genomes]
rs9403602	0.87[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs9403608	0.85[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs9497097	0.82[AMR][1000 genomes];0.94[EUR][1000 genomes];0.87[ASN][1000 genomes]

No data

Chromatin state (count:6 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:100695200-100705600	Weak transcription	Pancreatic Islets	Pancreatic Islet
2	chr6:100702400-100708800	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
3	chr6:100703400-100704400	Enhancers	Dnd41	blood
4	chr6:100703600-100704200	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
5	chr6:100703800-100706000	Weak transcription	ES-I3 Cell Line	embryonic stem cell
6	chr6:100703800-100715600	Weak transcription	HSMM	muscle

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