Variant report

Variant	rs6908702
Chromosome Location	chr6:70507984-70507985
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 10 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:8)

rs_ID	r²[population]
rs28459063	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs28497909	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs6924798	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs6932431	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs6932605	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs6933298	1.00[AFR][1000 genomes]
rs7758522	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7761441	0.89[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv886140	chr6:70354682-70728202	Strong transcription Enhancers Genic enhancers Weak transcription Active TSS Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	19 gene(s)	inside rSNPs	diseases
2	nsv830682	chr6:70397851-70592883	Weak transcription Strong transcription Enhancers Bivalent Enhancer ZNF genes & repeats Flanking Active TSS Flanking Bivalent TSS/Enh Active TSS Bivalent/Poised TSS Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	19 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:31 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:70507200-70508000	Enhancers	Primary T helper memory cells from peripheral blood 2	blood
2	chr6:70507200-70508000	Enhancers	Primary T killer naive cells fromperipheralblood	blood
3	chr6:70507200-70512800	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
4	chr6:70507400-70508000	Enhancers	Primary T helper memory cells from peripheral blood 1	blood
5	chr6:70507400-70508000	Enhancers	Primary T helper 17 cells PMA-I stimulated	--
6	chr6:70507400-70508000	Enhancers	Primary T killer memory cells from peripheral blood	blood
7	chr6:70507400-70508000	Enhancers	Colon Smooth Muscle	Colon
8	chr6:70507400-70508000	Enhancers	Fetal Muscle Leg	muscle
9	chr6:70507400-70508000	Enhancers	Psoas Muscle	Psoas
10	chr6:70507400-70508000	Enhancers	Rectal Smooth Muscle	rectum
11	chr6:70507400-70508000	Enhancers	Skeletal Muscle Female	skeletal muscle
12	chr6:70507400-70508000	Enhancers	K562	blood
13	chr6:70507400-70508200	Enhancers	Breast Myoepithelial Primary Cells	Breast
14	chr6:70507400-70508200	Enhancers	Primary T helper naive cells from peripheral blood	blood
15	chr6:70507400-70510000	Weak transcription	Fetal Brain Male	brain
16	chr6:70507400-70511000	Weak transcription	H1 Cell Line	embryonic stem cell
17	chr6:70507400-70511000	Weak transcription	HUES6 Cell Line	embryonic stem cell
18	chr6:70507400-70511000	Weak transcription	iPS-18 Cell Line	embryonic stem cell
19	chr6:70507400-70511000	Weak transcription	Fetal Thymus	thymus
20	chr6:70507400-70511400	Weak transcription	HUES64 Cell Line	embryonic stem cell
21	chr6:70507400-70511600	Weak transcription	HUES48 Cell Line	embryonic stem cell
22	chr6:70507400-70511600	Weak transcription	iPS-15b Cell Line	embryonic stem cell
23	chr6:70507400-70511600	Weak transcription	iPS-20b Cell Line	embryonic stem cell
24	chr6:70507400-70512200	Weak transcription	H9 Cell Line	embryonic stem cell
25	chr6:70507400-70519400	Weak transcription	Primary B cells from cord blood	blood
26	chr6:70507400-70521800	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
27	chr6:70507600-70508000	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
28	chr6:70507600-70508000	Enhancers	Aorta	Aorta
29	chr6:70507800-70508000	Enhancers	Fetal Heart	heart
30	chr6:70507800-70508000	Flanking Active TSS	Stomach Smooth Muscle	stomach
31	chr6:70507800-70510200	Weak transcription	Fetal Lung	lung

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