Variant report

Variant	rs6924798
Chromosome Location	chr6:70500557-70500558
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	EP300	chr6:70500517-70500753	GM12878	blood:	n/a	n/a

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr6:70499217..70503850-chr6:70504773..70507699,6	K562	blood:

Variant related genes	Relation type
LMBRD1	TF binding region
ENSG00000168216	Chromatin interaction

Extended variants
information (count: 10 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:8)

rs_ID	r²[population]
rs28459063	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs28497909	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs6908702	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs6932431	1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs6932605	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs6933298	1.00[AFR][1000 genomes]
rs7758522	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7761441	0.89[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv886140	chr6:70354682-70728202	Strong transcription Enhancers Genic enhancers Weak transcription Active TSS Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	19 gene(s)	inside rSNPs	diseases
2	nsv830682	chr6:70397851-70592883	Weak transcription Strong transcription Enhancers Bivalent Enhancer ZNF genes & repeats Flanking Active TSS Flanking Bivalent TSS/Enh Active TSS Bivalent/Poised TSS Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	19 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:111 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:70453800-70505600	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
2	chr6:70477200-70505200	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
3	chr6:70477600-70501600	Weak transcription	Fetal Kidney	kidney
4	chr6:70477600-70505400	Weak transcription	NHDF-Ad	bronchial
5	chr6:70478400-70505000	Weak transcription	Fetal Brain Male	brain
6	chr6:70479600-70500600	Weak transcription	Brain Germinal Matrix	brain
7	chr6:70479800-70506200	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
8	chr6:70480200-70506000	Weak transcription	Lung	lung
9	chr6:70481400-70502200	Weak transcription	Spleen	Spleen
10	chr6:70481600-70501000	Weak transcription	iPS-18 Cell Line	embryonic stem cell
11	chr6:70481600-70505000	Weak transcription	Aorta	Aorta
12	chr6:70483200-70500800	Weak transcription	Fetal Brain Female	brain
13	chr6:70483400-70501200	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
14	chr6:70484200-70505200	Weak transcription	Primary hematopoietic stem cells	blood
15	chr6:70486400-70501000	Weak transcription	HUES48 Cell Line	embryonic stem cell
16	chr6:70486400-70501000	Weak transcription	Brain Angular Gyrus	brain
17	chr6:70486400-70501000	Weak transcription	Brain Hippocampus Middle	brain
18	chr6:70486600-70501000	Weak transcription	Brain Anterior Caudate	brain
19	chr6:70486600-70501000	Weak transcription	Brain Inferior Temporal Lobe	brain
20	chr6:70486600-70501200	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
21	chr6:70487200-70501800	Weak transcription	Thymus	Thymus
22	chr6:70487200-70505200	Weak transcription	NHLF	lung
23	chr6:70488000-70505200	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
24	chr6:70488600-70501200	Weak transcription	Fetal Lung	lung
25	chr6:70490200-70501800	Weak transcription	Esophagus	oesophagus
26	chr6:70490200-70505600	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
27	chr6:70490400-70501200	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
28	chr6:70490400-70505400	Weak transcription	Fetal Muscle Leg	muscle
29	chr6:70490800-70503800	Weak transcription	Dnd41	blood
30	chr6:70490800-70505000	Weak transcription	Hela-S3	cervix
31	chr6:70491000-70500800	Weak transcription	HMEC	breast
32	chr6:70491000-70501000	Weak transcription	ES-I3 Cell Line	embryonic stem cell
33	chr6:70491200-70501000	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
34	chr6:70491200-70501000	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
35	chr6:70491400-70500800	Weak transcription	NHEK	skin
36	chr6:70491600-70504600	Weak transcription	HepG2	liver
37	chr6:70492800-70500600	Weak transcription	Colon Smooth Muscle	Colon
38	chr6:70492800-70505000	Weak transcription	Primary T cells from cord blood	blood
39	chr6:70494000-70505400	Weak transcription	Fetal Stomach	stomach
40	chr6:70495200-70501000	Weak transcription	Rectal Smooth Muscle	rectum
41	chr6:70495200-70504000	Weak transcription	Primary T helper naive cells from peripheral blood	blood
42	chr6:70495400-70501400	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
43	chr6:70495400-70506000	Weak transcription	Stomach Mucosa	stomach
44	chr6:70495600-70500800	Weak transcription	HUES6 Cell Line	embryonic stem cell
45	chr6:70495600-70500800	Weak transcription	Small Intestine	intestine
46	chr6:70495600-70501200	Weak transcription	Stomach Smooth Muscle	stomach
47	chr6:70495600-70501600	Weak transcription	Right Ventricle	heart
48	chr6:70495800-70501000	Weak transcription	Psoas Muscle	Psoas
49	chr6:70495800-70505400	Weak transcription	Pancreas	Pancrea
50	chr6:70496000-70501000	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived

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