Variant report

Variant	rs6909613
Chromosome Location	chr6:64748800-64748801
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr6:64748612..64751041-chr6:64751525..64753155,2	MCF-7	breast:

Extended variants
information (count: 38 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:32)

rs_ID	r²[population]
rs1038316	0.81[EUR][1000 genomes]
rs1038317	0.80[EUR][1000 genomes]
rs10944299	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs11757992	0.82[EUR][1000 genomes]
rs12190415	0.87[EUR][1000 genomes]
rs12205397	0.80[EUR][1000 genomes]
rs35431369	0.81[EUR][1000 genomes]
rs4530841	0.81[EUR][1000 genomes]
rs4563699	0.91[AMR][1000 genomes];0.94[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs4710458	0.80[EUR][1000 genomes]
rs6902200	0.86[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs6930818	1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs6936438	0.81[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs716618	0.81[EUR][1000 genomes]
rs727347	0.80[EUR][1000 genomes]
rs7757884	0.88[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs7761892	0.90[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs9342097	0.80[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs9344655	0.81[EUR][1000 genomes]
rs9344659	0.84[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs9344688	0.91[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs9351111	0.94[AMR][1000 genomes];0.90[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs9351119	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs9353436	0.80[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs9353439	0.80[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs9353440	0.86[EUR][1000 genomes]
rs9353441	0.84[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs9362371	0.81[EUR][1000 genomes]
rs9362375	0.85[EUR][1000 genomes]
rs9362406	0.88[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs9450605	0.82[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs967075	0.80[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:6 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1020226	chr6:64582008-64793525	Enhancers Weak transcription Active TSS Flanking Active TSS ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
2	nsv538271	chr6:64582008-64793525	Enhancers Weak transcription Flanking Active TSS Active TSS Bivalent Enhancer ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
3	nsv603376	chr6:64589465-64771342	Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats Bivalent Enhancer	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases
4	nsv1026162	chr6:64639580-65470828	Enhancers Weak transcription ZNF genes & repeats Active TSS Flanking Active TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
5	nsv538272	chr6:64639580-65470828	Active TSS Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
6	nsv1027073	chr6:64723023-64893945	Weak transcription Active TSS Enhancers Flanking Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:64745200-64750000	Weak transcription	Fetal Heart	heart

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