Variant report

Variant	rs9353439
Chromosome Location	chr6:64729391-64729392
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 49 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:43)

rs_ID	r²[population]
rs1038316	0.90[EUR][1000 genomes]
rs1038317	0.91[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs10944281	0.99[AFR][1000 genomes];0.86[AMR][1000 genomes];0.87[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs10944299	0.80[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs11757992	0.94[AMR][1000 genomes];0.95[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs11759618	0.88[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs12190415	0.96[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs12205397	0.91[AMR][1000 genomes];0.93[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs35431369	0.81[AMR][1000 genomes];0.94[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs4530841	0.90[EUR][1000 genomes]
rs4563699	0.84[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs4710458	0.91[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs60945987	0.80[ASN][1000 genomes]
rs62415275	0.85[AMR][1000 genomes];0.86[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs66502009	0.80[ASN][1000 genomes]
rs6902200	0.94[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs6909613	0.80[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs6930818	0.80[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs6936438	0.91[EUR][1000 genomes]
rs716618	0.90[EUR][1000 genomes]
rs727347	0.88[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs7739137	0.89[EUR][1000 genomes]
rs7749459	0.85[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs7757884	0.90[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs7760226	0.89[EUR][1000 genomes]
rs7761892	0.87[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs9342097	0.99[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs9344655	0.92[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs9344659	0.94[AMR][1000 genomes];0.97[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs9344688	0.88[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs9351111	0.84[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs9351119	0.80[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs9353436	0.99[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs9353437	0.85[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs9353440	0.99[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs9353441	0.94[AMR][1000 genomes];0.97[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs9362371	0.92[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs9362372	0.82[EUR][1000 genomes]
rs9362375	0.99[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs9362406	0.90[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs9444417	0.89[EUR][1000 genomes]
rs9450605	0.99[AMR][1000 genomes];0.98[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs967075	0.90[AMR][1000 genomes];0.93[EUR][1000 genomes];0.81[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:6 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1020226	chr6:64582008-64793525	Enhancers Weak transcription Active TSS Flanking Active TSS ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
2	nsv538271	chr6:64582008-64793525	Enhancers Weak transcription Flanking Active TSS Active TSS Bivalent Enhancer ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
3	nsv603376	chr6:64589465-64771342	Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats Bivalent Enhancer	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases
4	nsv1026162	chr6:64639580-65470828	Enhancers Weak transcription ZNF genes & repeats Active TSS Flanking Active TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
5	nsv538272	chr6:64639580-65470828	Active TSS Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
6	nsv1027073	chr6:64723023-64893945	Weak transcription Active TSS Enhancers Flanking Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:2 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:64725200-64731000	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
2	chr6:64726600-64731200	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived

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