Variant report

rSNPs within LD-proxies of this variant (count:27)

rs_ID	r²[population]
rs1038317	0.81[EUR][1000 genomes]
rs11757992	0.83[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs12190415	0.82[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs12205397	0.81[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs35431369	0.81[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs4710458	0.81[EUR][1000 genomes]
rs60945987	0.83[ASN][1000 genomes]
rs62415275	0.99[AMR][1000 genomes];0.99[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs66502009	0.83[ASN][1000 genomes]
rs6902200	0.84[EUR][1000 genomes]
rs727347	0.81[EUR][1000 genomes]
rs7749459	0.99[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs9342097	1.00[AFR][1000 genomes];0.86[AMR][1000 genomes];0.86[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9344655	0.82[EUR][1000 genomes]
rs9344659	0.84[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs9344688	0.80[EUR][1000 genomes]
rs9351111	0.84[EUR][1000 genomes]
rs9353436	1.00[AFR][1000 genomes];0.86[AMR][1000 genomes];0.87[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9353437	0.99[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs9353439	0.99[AFR][1000 genomes];0.86[AMR][1000 genomes];0.87[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs9353440	0.85[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs9353441	0.84[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs9362371	0.82[EUR][1000 genomes]
rs9362372	0.92[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs9362375	0.85[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs9450605	0.85[AMR][1000 genomes];0.85[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs967075	0.81[EUR][1000 genomes];0.84[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:6 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1020226	chr6:64582008-64793525	Enhancers Weak transcription Active TSS Flanking Active TSS ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
2	nsv538271	chr6:64582008-64793525	Enhancers Weak transcription Flanking Active TSS Active TSS Bivalent Enhancer ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
3	nsv603376	chr6:64589465-64771342	Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats Bivalent Enhancer	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases
4	nsv1026162	chr6:64639580-65470828	Enhancers Weak transcription ZNF genes & repeats Active TSS Flanking Active TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
5	nsv538272	chr6:64639580-65470828	Active TSS Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
6	nsv1027073	chr6:64723023-64893945	Weak transcription Active TSS Enhancers Flanking Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:20 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:64720400-64725600	Weak transcription	Placenta Amnion	Placenta Amnion
2	chr6:64722000-64723400	Enhancers	iPS-18 Cell Line	embryonic stem cell
3	chr6:64722200-64723600	Enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
4	chr6:64722200-64725600	Weak transcription	HUES64 Cell Line	embryonic stem cell
5	chr6:64722400-64723400	Enhancers	Ganglion Eminence derived primary cultured neurospheres	brain
6	chr6:64722400-64723400	Flanking Active TSS	Fetal Brain Female	brain
7	chr6:64722400-64723600	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
8	chr6:64722800-64723400	Active TSS	Brain Germinal Matrix	brain
9	chr6:64722800-64723600	Enhancers	Fetal Kidney	kidney
10	chr6:64722800-64724200	Enhancers	Fetal Brain Male	brain
11	chr6:64722800-64725600	Weak transcription	HUES6 Cell Line	embryonic stem cell
12	chr6:64723000-64723400	Flanking Active TSS	Brain Inferior Temporal Lobe	brain
13	chr6:64723000-64724000	Enhancers	Cortex derived primary cultured neurospheres	brain
14	chr6:64723000-64724200	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
15	chr6:64723000-64725200	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
16	chr6:64723200-64723400	Enhancers	HUES48 Cell Line	embryonic stem cell
17	chr6:64723200-64723400	Flanking Active TSS	Brain Cingulate Gyrus	brain
18	chr6:64723200-64723400	Flanking Active TSS	Brain Hippocampus Middle	brain
19	chr6:64723200-64723400	Flanking Active TSS	Pancreatic Islets	Pancreatic Islet
20	chr6:64723200-64723600	Enhancers	Fetal Lung	lung

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