Variant report

Variant	rs7749459
Chromosome Location	chr6:64722795-64722796
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr6:64722104..64722842-chr6:65040545..65041404,3	MCF-7	breast:

Extended variants
information (count: 34 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:29)

rs_ID	r²[population]
rs1038317	0.85[AFR][1000 genomes];0.82[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs10944281	0.99[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs11757992	0.82[EUR][1000 genomes]
rs11759618	0.83[AFR][1000 genomes];0.81[ASN][1000 genomes]
rs12190415	0.83[AMR][1000 genomes];0.86[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs12205397	0.82[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs4710458	0.82[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs62415275	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs66502009	0.81[AFR][1000 genomes]
rs6902200	0.83[EUR][1000 genomes]
rs6936438	0.81[EUR][1000 genomes]
rs727347	0.82[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs7757884	0.81[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs7761892	0.80[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs9342097	0.85[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs9344655	0.86[AFR][1000 genomes];0.83[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs9344659	0.81[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs9351111	0.83[EUR][1000 genomes]
rs9353436	0.85[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs9353437	0.81[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs9353439	0.85[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs9353440	1.00[AFR][1000 genomes];0.86[AMR][1000 genomes];0.87[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs9353441	0.81[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs9362371	0.86[AFR][1000 genomes];0.83[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs9362372	0.93[AMR][1000 genomes];0.95[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs9362375	1.00[AFR][1000 genomes];0.86[AMR][1000 genomes];0.88[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9362406	0.81[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs9450605	0.84[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs967075	0.82[EUR][1000 genomes];0.80[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1020226	chr6:64582008-64793525	Enhancers Weak transcription Active TSS Flanking Active TSS ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
2	nsv538271	chr6:64582008-64793525	Enhancers Weak transcription Flanking Active TSS Active TSS Bivalent Enhancer ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
3	nsv603376	chr6:64589465-64771342	Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats Bivalent Enhancer	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases
4	nsv1026162	chr6:64639580-65470828	Enhancers Weak transcription ZNF genes & repeats Active TSS Flanking Active TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
5	nsv538272	chr6:64639580-65470828	Active TSS Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:26 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:64720400-64725600	Weak transcription	Placenta Amnion	Placenta Amnion
2	chr6:64721600-64723200	Enhancers	Rectal Mucosa Donor 31	rectum
3	chr6:64722000-64722800	Enhancers	HUES6 Cell Line	embryonic stem cell
4	chr6:64722000-64723400	Enhancers	iPS-18 Cell Line	embryonic stem cell
5	chr6:64722200-64722800	Enhancers	Brain Germinal Matrix	brain
6	chr6:64722200-64723600	Enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
7	chr6:64722200-64725600	Weak transcription	HUES64 Cell Line	embryonic stem cell
8	chr6:64722400-64722800	Enhancers	ES-WA7 Cell Line	embryonic stem cell
9	chr6:64722400-64722800	Flanking Active TSS	Fetal Brain Male	brain
10	chr6:64722400-64722800	Flanking Active TSS	Fetal Kidney	kidney
11	chr6:64722400-64723000	Flanking Active TSS	Cortex derived primary cultured neurospheres	brain
12	chr6:64722400-64723000	Active TSS	Brain Inferior Temporal Lobe	brain
13	chr6:64722400-64723000	Flanking Active TSS	Pancreatic Islets	Pancreatic Islet
14	chr6:64722400-64723200	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
15	chr6:64722400-64723200	Active TSS	Brain Anterior Caudate	brain
16	chr6:64722400-64723200	Active TSS	Brain Cingulate Gyrus	brain
17	chr6:64722400-64723200	Active TSS	Brain Hippocampus Middle	brain
18	chr6:64722400-64723200	Active TSS	Brain Substantia Nigra	brain
19	chr6:64722400-64723400	Enhancers	Ganglion Eminence derived primary cultured neurospheres	brain
20	chr6:64722400-64723400	Flanking Active TSS	Fetal Brain Female	brain
21	chr6:64722400-64723600	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
22	chr6:64722600-64722800	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
23	chr6:64722600-64723000	Active TSS	Foreskin Melanocyte Primary Cells skin03	Skin
24	chr6:64722600-64723000	Enhancers	Fetal Stomach	stomach
25	chr6:64722600-64723200	Active TSS	Brain Angular Gyrus	brain
26	chr6:64722600-64723200	Flanking Active TSS	Fetal Lung	lung

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