Variant report
Variant | rs62415275 |
---|---|
Chromosome Location | chr6:64726334-64726335 |
allele | C/T |
Outlinks | Ensembl   UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:0)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
No data |
No data |
No data |
No data |
No data |
No data |
No data |
rs_ID | r2[population] |
---|---|
rs1038317 | 0.82[EUR][1000 genomes];0.81[ASN][1000 genomes] |
rs10944281 | 0.99[AMR][1000 genomes];0.99[EUR][1000 genomes];0.87[ASN][1000 genomes] |
rs11757992 | 0.82[EUR][1000 genomes];0.84[ASN][1000 genomes] |
rs12190415 | 0.83[AMR][1000 genomes];0.86[EUR][1000 genomes];0.82[ASN][1000 genomes] |
rs12205397 | 0.82[EUR][1000 genomes];0.96[ASN][1000 genomes] |
rs35431369 | 0.88[ASN][1000 genomes] |
rs4710458 | 0.82[EUR][1000 genomes] |
rs60945987 | 0.91[ASN][1000 genomes] |
rs66502009 | 0.95[ASN][1000 genomes] |
rs6902200 | 0.83[EUR][1000 genomes] |
rs6936438 | 0.81[EUR][1000 genomes] |
rs727347 | 0.82[EUR][1000 genomes] |
rs7749459 | 1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.82[ASN][1000 genomes] |
rs7757884 | 0.81[EUR][1000 genomes] |
rs7761892 | 0.80[EUR][1000 genomes] |
rs9342097 | 0.85[AMR][1000 genomes];0.85[EUR][1000 genomes];0.87[ASN][1000 genomes] |
rs9344655 | 0.83[EUR][1000 genomes];0.81[ASN][1000 genomes] |
rs9344659 | 0.81[AMR][1000 genomes];0.85[EUR][1000 genomes];0.96[ASN][1000 genomes] |
rs9351111 | 0.83[EUR][1000 genomes] |
rs9353436 | 0.85[AMR][1000 genomes];0.86[EUR][1000 genomes];0.87[ASN][1000 genomes] |
rs9353437 | 1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.83[ASN][1000 genomes] |
rs9353439 | 0.85[AMR][1000 genomes];0.86[EUR][1000 genomes];0.85[ASN][1000 genomes] |
rs9353440 | 0.86[AMR][1000 genomes];0.87[EUR][1000 genomes];0.82[ASN][1000 genomes] |
rs9353441 | 0.81[AMR][1000 genomes];0.85[EUR][1000 genomes];0.93[ASN][1000 genomes] |
rs9362371 | 0.83[EUR][1000 genomes];0.81[ASN][1000 genomes] |
rs9362372 | 0.93[AMR][1000 genomes];0.95[EUR][1000 genomes];0.81[ASN][1000 genomes] |
rs9362375 | 0.86[AMR][1000 genomes];0.88[EUR][1000 genomes];0.82[ASN][1000 genomes] |
rs9362406 | 0.81[EUR][1000 genomes] |
rs9450605 | 0.84[AMR][1000 genomes];0.84[EUR][1000 genomes];0.88[ASN][1000 genomes] |
rs967075 | 0.82[EUR][1000 genomes];0.96[ASN][1000 genomes] |

No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
---|---|---|---|---|---|---|---|
1 | nsv1020226 | chr6:64582008-64793525 | Enhancers Weak transcription Active TSS Flanking Active TSS ZNF genes & repeats Bivalent Enhancer | TF binding regionCpG islandChromatin interactive regionlncRNA | 1 gene(s) | inside rSNPs | diseases |
2 | nsv538271 | chr6:64582008-64793525 | Enhancers Weak transcription Flanking Active TSS Active TSS Bivalent Enhancer ZNF genes & repeats | TF binding regionCpG islandChromatin interactive regionlncRNA | 1 gene(s) | inside rSNPs | diseases |
3 | nsv603376 | chr6:64589465-64771342 | Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats Bivalent Enhancer | Chromatin interactive regionlncRNA | n/a | inside rSNPs | diseases |
4 | nsv1026162 | chr6:64639580-65470828 | Enhancers Weak transcription ZNF genes & repeats Active TSS Flanking Active TSS Bivalent Enhancer | TF binding regionCpG islandChromatin interactive regionlncRNA | 4 gene(s) | inside rSNPs | diseases |
5 | nsv538272 | chr6:64639580-65470828 | Active TSS Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Bivalent Enhancer | TF binding regionCpG islandChromatin interactive regionlncRNA | 4 gene(s) | inside rSNPs | diseases |
6 | nsv1027073 | chr6:64723023-64893945 | Weak transcription Active TSS Enhancers Flanking Active TSS ZNF genes & repeats | TF binding regionCpG islandChromatin interactive region | 1 gene(s) | inside rSNPs | diseases |
No data |
No. | Chromosome Location | Chromatin state | Cell line | Tissue |
---|---|---|---|---|
1 | chr6:64725200-64731000 | Weak transcription | Foreskin Melanocyte Primary Cells skin03 | Skin |
2 | chr6:64726200-64726600 | Enhancers | H1 BMP4 Derived Mesendoderm Cultured Cells | ES cell derived |
3 | chr6:64726200-64726800 | Weak transcription | HUES6 Cell Line | embryonic stem cell |