Variant report

Variant	rs6909921
Chromosome Location	chr6:164003477-164003478
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr6:163834825..163838285-chr6:164001689..164007516,7	K562	blood:

Variant related genes	Relation type
ENSG00000112531	Chromatin interaction
ENSG00000270419	Chromatin interaction

Extended variants
information (count: 12 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:8)

rs_ID	r²[population]
rs1737603	0.82[YRI][hapmap]
rs2745364	0.85[YRI][hapmap]
rs2759387	0.85[YRI][hapmap]
rs6915247	0.85[YRI][hapmap]
rs7749189	1.00[YRI][hapmap]
rs783138	0.82[YRI][hapmap]
rs9347754	0.85[YRI][hapmap]
rs9456869	0.85[YRI][hapmap]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1018860	chr6:163939347-164532579	Flanking Active TSS Enhancers Weak transcription ZNF genes & repeats Active TSS Genic enhancers Strong transcription Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	14 gene(s)	inside rSNPs	diseases
2	nsv538526	chr6:163939347-164532579	Weak transcription Enhancers Active TSS Flanking Active TSS Genic enhancers Flanking Bivalent TSS/Enh Strong transcription Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	14 gene(s)	inside rSNPs	diseases
3	esv2758092	chr6:163992064-164161903	Enhancers Weak transcription Flanking Active TSS Bivalent Enhancer Strong transcription Genic enhancers ZNF genes & repeats Active TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	10 gene(s)	inside rSNPs	diseases
4	esv2759490	chr6:163992064-164161903	Strong transcription Enhancers Weak transcription Bivalent Enhancer Flanking Active TSS Genic enhancers ZNF genes & repeats Active TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	10 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:42 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:163985000-164006800	Weak transcription	Spleen	Spleen
2	chr6:163986600-164007000	Weak transcription	Aorta	Aorta
3	chr6:163987600-164007000	Weak transcription	Hela-S3	cervix
4	chr6:163992200-164007200	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
5	chr6:163992200-164007200	Weak transcription	Duodenum Smooth Muscle	Duodenum
6	chr6:163992200-164009000	Weak transcription	GM12878-XiMat	blood
7	chr6:163992400-164005800	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
8	chr6:163992400-164007000	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
9	chr6:163992400-164007800	Weak transcription	Lung	lung
10	chr6:163994000-164004800	Weak transcription	HepG2	liver
11	chr6:163994000-164007200	Weak transcription	NHLF	lung
12	chr6:163994200-164006400	Weak transcription	A549	lung
13	chr6:163994200-164006400	Weak transcription	HUVEC	blood vessel
14	chr6:163994400-164006600	Weak transcription	Muscle Satellite Cultured Cells	--
15	chr6:163995200-164007200	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
16	chr6:163995600-164006800	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
17	chr6:163996200-164007000	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
18	chr6:163996200-164007200	Weak transcription	NHDF-Ad	bronchial
19	chr6:163997600-164006400	Weak transcription	Primary monocytes fromperipheralblood	blood
20	chr6:163998000-164006200	Weak transcription	Monocytes-CD14+_RO01746	blood
21	chr6:163998200-164010800	Enhancers	Brain Cingulate Gyrus	brain
22	chr6:163998400-164007800	Enhancers	Brain Hippocampus Middle	brain
23	chr6:163998800-164003800	Enhancers	Fetal Heart	heart
24	chr6:163998800-164009000	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
25	chr6:163999800-164004800	Enhancers	Brain Substantia Nigra	brain
26	chr6:164000000-164006600	Weak transcription	HSMM	muscle
27	chr6:164000400-164007200	Weak transcription	HSMMtube	muscle
28	chr6:164000600-164006200	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
29	chr6:164000600-164007200	Weak transcription	Right Ventricle	heart
30	chr6:164000600-164007800	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
31	chr6:164001000-164003600	Enhancers	Brain Angular Gyrus	brain
32	chr6:164001200-164004800	Weak transcription	Left Ventricle	heart
33	chr6:164001600-164005400	Weak transcription	Cortex derived primary cultured neurospheres	brain
34	chr6:164001600-164006400	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
35	chr6:164001600-164006800	Weak transcription	Adipose Nuclei	Adipose
36	chr6:164001800-164006800	Weak transcription	Brain Inferior Temporal Lobe	brain
37	chr6:164002200-164007000	Weak transcription	Brain Anterior Caudate	brain
38	chr6:164002400-164005000	Enhancers	Skeletal Muscle Female	skeletal muscle
39	chr6:164002800-164003600	Enhancers	Skeletal Muscle Male	skeletal muscle
40	chr6:164002800-164005800	Weak transcription	K562	blood
41	chr6:164003400-164003800	Enhancers	Brain Dorsolateral Prefrontal Cortex	brain
42	chr6:164003400-164003800	Enhancers	Psoas Muscle	Psoas

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