Variant report

Variant	rs6910649
Chromosome Location	chr6:87814241-87814242
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 10 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:9)

rs_ID	r²[population]
rs1055409	0.95[CEU][hapmap];0.83[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs1998617	1.00[CEU][hapmap];0.88[CHB][hapmap];0.89[AMR][1000 genomes];0.97[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs6909630	1.00[CEU][hapmap];0.88[CHB][hapmap];0.95[YRI][hapmap];0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs6909901	0.82[ASN][1000 genomes]
rs7738290	1.00[CEU][hapmap];0.89[CHB][hapmap];0.98[AMR][1000 genomes];0.91[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs7745823	0.83[CEU][hapmap];0.80[EUR][1000 genomes]
rs7748510	0.95[CEU][hapmap];0.82[EUR][1000 genomes]
rs9294363	0.87[EUR][1000 genomes]
rs9344675	1.00[CEU][hapmap];0.88[CHB][hapmap];0.95[YRI][hapmap];0.93[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];0.85[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1024751	chr6:87433199-87908721	Flanking Active TSS Active TSS Enhancers ZNF genes & repeats Weak transcription Bivalent Enhancer Strong transcription Flanking Bivalent TSS/Enh Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	27 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:8 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:87803600-87816000	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
2	chr6:87812600-87814400	Weak transcription	Primary neutrophils fromperipheralblood	blood
3	chr6:87813800-87815400	Enhancers	Primary monocytes fromperipheralblood	blood
4	chr6:87814000-87814600	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
5	chr6:87814000-87814800	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
6	chr6:87814000-87815000	Enhancers	Monocytes-CD14+_RO01746	blood
7	chr6:87814200-87814400	Enhancers	Primary hematopoietic stem cells	blood
8	chr6:87814200-87816600	Enhancers	Placenta Amnion	Placenta Amnion

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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