Variant report

Variant rs6910777
Chromosome Location chr6:53702493-53702494
allele A/G
Outlinks Ensembl   UCSC
Chromatin state (count:49 , 50 per page) page: 1
No. Chromosome Location Chromatin state Cell line Tissue
1 chr6:53680400-53721600 Weak transcription iPS DF 6.9 Cell Line embryonic stem cell
2 chr6:53684000-53710200 Weak transcription Primary T cells from cord blood blood
3 chr6:53692600-53702600 Weak transcription Aorta Aorta
4 chr6:53693400-53720000 Weak transcription Left Ventricle heart
5 chr6:53694000-53708400 Weak transcription Fetal Thymus thymus
6 chr6:53695000-53702600 Weak transcription Gastric stomach
7 chr6:53695000-53705600 Weak transcription H1 BMP4 Derived Trophoblast Cultured Cells ES cell derived
8 chr6:53695000-53710000 Weak transcription H9 Cell Line embryonic stem cell
9 chr6:53695000-53719800 Weak transcription IMR90 fetal lung fibroblasts Cell Line lung
10 chr6:53695000-53743200 Weak transcription H1 Derived Mesenchymal Stem Cells ES cell derived
11 chr6:53696200-53702600 Weak transcription iPS-18 Cell Line embryonic stem cell
12 chr6:53696400-53708400 Weak transcription Sigmoid Colon Sigmoid Colon
13 chr6:53696600-53702600 Weak transcription HUES48 Cell Line embryonic stem cell
14 chr6:53697200-53718600 Weak transcription Duodenum Mucosa Duodenum
15 chr6:53698000-53702600 Weak transcription H1 Derived Neuronal Progenitor Cultured Cells ES cell derived
16 chr6:53698000-53715600 Weak transcription Rectal Mucosa Donor 31 rectum
17 chr6:53698200-53702600 Weak transcription Duodenum Smooth Muscle Duodenum
18 chr6:53698200-53702800 Weak transcription HSMMtube muscle
19 chr6:53698200-53702800 Weak transcription HUVEC blood vessel
20 chr6:53698400-53702600 Weak transcription Breast variant Human Mammary Epithelial Cells (vHMEC) Breast
21 chr6:53698600-53702600 Weak transcription HMEC breast
22 chr6:53699000-53704800 Weak transcription Fetal Intestine Small intestine
23 chr6:53699200-53702600 Weak transcription Brain Dorsolateral Prefrontal Cortex brain
24 chr6:53699200-53703400 Weak transcription HUES64 Cell Line embryonic stem cell
25 chr6:53699400-53702600 Weak transcription hESC Derived CD184+ Endoderm Cultured Cells ES cell derived
26 chr6:53699400-53702600 Weak transcription Foreskin Keratinocyte Primary Cells skin03 Skin
27 chr6:53699400-53709200 Weak transcription H1 BMP4 Derived Mesendoderm Cultured Cells ES cell derived
28 chr6:53700000-53704800 Enhancers H9 Derived Neuron Cultured Cells ES cell derived
29 chr6:53700200-53703000 Enhancers Cortex derived primary cultured neurospheres brain
30 chr6:53700400-53709200 Weak transcription Foreskin Keratinocyte Primary Cells skin02 Skin
31 chr6:53701000-53702800 Weak transcription HepG2 liver
32 chr6:53701200-53702600 Weak transcription Pancreas Pancrea
33 chr6:53701400-53702600 Enhancers Rectal Smooth Muscle rectum
34 chr6:53701600-53702800 Enhancers Foreskin Melanocyte Primary Cells skin03 Skin
35 chr6:53701800-53702600 Enhancers Brain Angular Gyrus brain
36 chr6:53701800-53702600 Weak transcription Brain Substantia Nigra brain
37 chr6:53702000-53702600 Enhancers Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells embryonic stem cell
38 chr6:53702000-53702600 Enhancers Pancreatic Islets Pancreatic Islet
39 chr6:53702000-53702800 Enhancers Ganglion Eminence derived primary cultured neurospheres brain
40 chr6:53702000-53702800 Enhancers Brain Cingulate Gyrus brain
41 chr6:53702000-53703200 Enhancers NHEK skin
42 chr6:53702000-53704600 Enhancers H9 Derived Neuronal Progenitor Cultured Cells ES cell derived
43 chr6:53702200-53703000 Enhancers Thymus Thymus
44 chr6:53702200-53703600 Enhancers Brain Inferior Temporal Lobe brain
45 chr6:53702200-53704400 Enhancers Colon Smooth Muscle Colon
46 chr6:53702400-53702600 Enhancers Brain Anterior Caudate brain
47 chr6:53702400-53703400 Flanking Active TSS Brain Germinal Matrix brain
48 chr6:53702400-53703600 Flanking Active TSS Brain Hippocampus Middle brain
49 chr6:53702400-53703600 Enhancers Fetal Heart heart

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