Variant report

Variant	rs6911970
Chromosome Location	chr6:143931940-143931941
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr6:143919523..143922006-chr6:143930988..143932681,2	K562	blood:

No.	lncRNA name	Chromosome Location	lncRNA alias
1	lnc-FUCA2-2	chr6:143931690-143932169	ucscGeneNc_uc003qjp_1

Extended variants
information (count: 27 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:23)

rs_ID	r²[population]
rs11155311	1.00[CHB][hapmap];0.89[JPT][hapmap];0.95[ASN][1000 genomes]
rs12192270	0.85[EUR][1000 genomes]
rs12193494	1.00[CHB][hapmap];1.00[JPT][hapmap];0.92[ASN][1000 genomes]
rs12193892	0.85[EUR][1000 genomes]
rs12197980	0.83[EUR][1000 genomes]
rs12199447	0.82[EUR][1000 genomes]
rs13191026	0.95[CEU][hapmap];1.00[CHB][hapmap];0.88[JPT][hapmap];0.81[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13195900	0.89[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13199393	1.00[CHB][hapmap];1.00[JPT][hapmap];0.92[ASN][1000 genomes]
rs1338535	1.00[CEU][hapmap];1.00[CHB][hapmap];0.89[JPT][hapmap];0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1539333	0.85[EUR][1000 genomes]
rs2328506	0.90[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs2328507	0.89[CEU][hapmap];0.90[EUR][1000 genomes]
rs34196129	0.90[EUR][1000 genomes]
rs35286147	0.88[EUR][1000 genomes]
rs35296418	0.91[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs4424099	0.90[EUR][1000 genomes]
rs56392216	0.90[EUR][1000 genomes]
rs67470559	0.81[AMR][1000 genomes];0.96[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs6937798	1.00[CHB][hapmap];1.00[JPT][hapmap];0.92[ASN][1000 genomes]
rs7745970	0.81[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7757372	1.00[CEU][hapmap];0.82[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs9496699	1.00[CEU][hapmap];0.89[CHB][hapmap];1.00[JPT][hapmap];0.89[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv2758084	chr6:143916621-144079976	Weak transcription Enhancers Genic enhancers Strong transcription Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
2	esv2759476	chr6:143916621-144079976	Enhancers Weak transcription Flanking Bivalent TSS/Enh Strong transcription Flanking Active TSS Active TSS ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
3	nsv1032369	chr6:143925374-144007513	Weak transcription Flanking Active TSS ZNF genes & repeats Enhancers Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS Strong transcription Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
4	nsv604805	chr6:143930404-144005949	Weak transcription Bivalent/Poised TSS Active TSS Enhancers Flanking Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent Enhancer Transcr. at gene 5' and 3' Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:24 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:143917000-143973600	Weak transcription	Fetal Intestine Small	intestine
2	chr6:143917200-143941400	Weak transcription	Fetal Intestine Large	intestine
3	chr6:143920000-143935200	Weak transcription	Primary T helper cells PMA-I stimulated	--
4	chr6:143920200-143935000	Weak transcription	Primary T cells fromperipheralblood	blood
5	chr6:143920600-143934800	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
6	chr6:143928600-143934400	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
7	chr6:143929200-143935400	Weak transcription	Primary T regulatory cells fromperipheralblood	blood
8	chr6:143929400-143934800	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
9	chr6:143929400-143935000	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
10	chr6:143929400-143935200	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
11	chr6:143929600-143938600	Weak transcription	Fetal Heart	heart
12	chr6:143929600-143941800	Weak transcription	Esophagus	oesophagus
13	chr6:143929600-143943400	Weak transcription	Left Ventricle	heart
14	chr6:143930200-143937800	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
15	chr6:143930400-143935400	Weak transcription	Stomach Smooth Muscle	stomach
16	chr6:143930400-143949400	Weak transcription	H9 Cell Line	embryonic stem cell
17	chr6:143930600-143934200	Weak transcription	Placenta	Placenta
18	chr6:143930600-143935800	Weak transcription	Pancreatic Islets	Pancreatic Islet
19	chr6:143930800-143946600	Weak transcription	Primary T cells from cord blood	blood
20	chr6:143931200-143935200	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
21	chr6:143931200-143935400	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
22	chr6:143931400-143932600	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
23	chr6:143931600-143932200	Enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
24	chr6:143931800-143932400	Weak transcription	Stomach Mucosa	stomach

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