Variant report

Variant	rs7745970
Chromosome Location	chr6:143935314-143935315
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr6:143926590..143928506-chr6:143934076..143936971,2	MCF-7	breast:
2	chr6:143933160..143936004-chr6:143939923..143941547,2	K562	blood:

Extended variants
information (count: 27 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:23)

rs_ID	r²[population]
rs11155311	0.95[ASN][1000 genomes]
rs12192270	0.85[EUR][1000 genomes]
rs12193494	0.92[ASN][1000 genomes]
rs12193892	0.85[EUR][1000 genomes]
rs12197980	0.84[EUR][1000 genomes]
rs12199447	0.83[EUR][1000 genomes]
rs13191026	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13195900	0.92[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13199393	0.92[ASN][1000 genomes]
rs1338535	0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1539333	0.85[EUR][1000 genomes]
rs2328506	0.89[AMR][1000 genomes];0.93[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs2328507	0.90[EUR][1000 genomes]
rs34196129	0.90[EUR][1000 genomes]
rs35286147	0.83[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs35296418	0.89[AMR][1000 genomes];0.92[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs4424099	0.83[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs56392216	0.83[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs67470559	0.96[AMR][1000 genomes];0.99[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs6911970	0.81[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6937798	0.92[ASN][1000 genomes]
rs7757372	0.93[EUR][1000 genomes]
rs9496699	0.92[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv2758084	chr6:143916621-144079976	Weak transcription Enhancers Genic enhancers Strong transcription Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
2	esv2759476	chr6:143916621-144079976	Enhancers Weak transcription Flanking Bivalent TSS/Enh Strong transcription Flanking Active TSS Active TSS ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
3	nsv1032369	chr6:143925374-144007513	Weak transcription Flanking Active TSS ZNF genes & repeats Enhancers Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS Strong transcription Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
4	nsv604805	chr6:143930404-144005949	Weak transcription Bivalent/Poised TSS Active TSS Enhancers Flanking Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent Enhancer Transcr. at gene 5' and 3' Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:33 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:143917000-143973600	Weak transcription	Fetal Intestine Small	intestine
2	chr6:143917200-143941400	Weak transcription	Fetal Intestine Large	intestine
3	chr6:143929200-143935400	Weak transcription	Primary T regulatory cells fromperipheralblood	blood
4	chr6:143929600-143938600	Weak transcription	Fetal Heart	heart
5	chr6:143929600-143941800	Weak transcription	Esophagus	oesophagus
6	chr6:143929600-143943400	Weak transcription	Left Ventricle	heart
7	chr6:143930200-143937800	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
8	chr6:143930400-143935400	Weak transcription	Stomach Smooth Muscle	stomach
9	chr6:143930400-143949400	Weak transcription	H9 Cell Line	embryonic stem cell
10	chr6:143930600-143935800	Weak transcription	Pancreatic Islets	Pancreatic Islet
11	chr6:143930800-143946600	Weak transcription	Primary T cells from cord blood	blood
12	chr6:143931200-143935400	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
13	chr6:143934400-143935600	Enhancers	Primary T helper 17 cells PMA-I stimulated	--
14	chr6:143934800-143935400	Enhancers	Placenta	Placenta
15	chr6:143934800-143936000	Enhancers	Primary T helper memory cells from peripheral blood 2	blood
16	chr6:143934800-143936400	Enhancers	Primary T helper memory cells from peripheral blood 1	blood
17	chr6:143935000-143935400	Enhancers	Primary T cells fromperipheralblood	blood
18	chr6:143935000-143935400	Enhancers	Primary Natural Killer cells fromperipheralblood	blood
19	chr6:143935000-143935600	Enhancers	Primary neutrophils fromperipheralblood	blood
20	chr6:143935000-143935600	Enhancers	Primary T helper cells fromperipheralblood	blood
21	chr6:143935000-143935600	Flanking Active TSS	Primary hematopoietic stem cells G-CSF-mobilized Male	--
22	chr6:143935000-143935800	Enhancers	Primary hematopoietic stem cells short term culture	blood
23	chr6:143935000-143935800	Weak transcription	Stomach Mucosa	stomach
24	chr6:143935000-143935800	Flanking Active TSS	Monocytes-CD14+_RO01746	blood
25	chr6:143935000-143936000	Enhancers	Primary B cells from peripheral blood	blood
26	chr6:143935200-143935600	Active TSS	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
27	chr6:143935200-143935600	Flanking Active TSS	Primary monocytes fromperipheralblood	blood
28	chr6:143935200-143935600	Enhancers	Primary hematopoietic stem cells	blood
29	chr6:143935200-143935600	Flanking Active TSS	Primary hematopoietic stem cells G-CSF-mobilized Female	--
30	chr6:143935200-143935600	Flanking Active TSS	Adipose Nuclei	Adipose
31	chr6:143935200-143936000	Enhancers	Primary T helper cells PMA-I stimulated	--
32	chr6:143935200-143936200	Enhancers	GM12878-XiMat	blood
33	chr6:143935200-143936400	Enhancers	Primary T helper naive cells from peripheral blood	blood

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