Variant report
| Variant | rs6912195 |
|---|---|
| Chromosome Location | chr6:44325862-44325863 |
| allele | A/G |
| Outlinks | Ensembl UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:1)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
| No data |
| No data |
(count:1 , 50 per page) page:
1
| No. | Distal block | Cell Line | Cell type | Cell Stage |
|---|---|---|---|---|
| 1 | chr6:44231038..44232613-chr6:44324108..44326590,2 | K562 | blood: |
| No data |
| No data |
| No data |
| No data |
rSNPs within LD-proxies of this variant (count:19)
| rs_ID | r2[population] |
|---|---|
| rs12197830 | 1.00[AFR][1000 genomes] |
| rs1293207 | 1.00[YRI][hapmap] |
| rs1293209 | 0.85[YRI][hapmap] |
| rs1473563 | 1.00[YRI][hapmap];1.00[AFR][1000 genomes] |
| rs1473564 | 1.00[YRI][hapmap];1.00[AFR][1000 genomes] |
| rs2754769 | 1.00[YRI][hapmap] |
| rs4714786 | 0.87[YRI][hapmap] |
| rs490814 | 1.00[YRI][hapmap] |
| rs6458383 | 1.00[YRI][hapmap] |
| rs6458384 | 1.00[YRI][hapmap] |
| rs6458385 | 1.00[YRI][hapmap] |
| rs6908640 | 1.00[YRI][hapmap] |
| rs6931374 | 1.00[YRI][hapmap];0.91[AFR][1000 genomes] |
| rs7747178 | 0.85[YRI][hapmap];0.95[AFR][1000 genomes] |
| rs7757621 | 1.00[YRI][hapmap] |
| rs856597 | 1.00[YRI][hapmap] |
| rs9296429 | 0.95[AFR][1000 genomes] |
| rs9472254 | 0.91[AFR][1000 genomes] |
| rs994736 | 1.00[YRI][hapmap];0.95[AFR][1000 genomes] |
Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page:
1
| No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
|---|---|---|---|---|---|---|---|
| 1 | nsv931987 | chr6:43624625-44350167 | Enhancers Flanking Bivalent TSS/Enh Weak transcription Genic enhancers Bivalent Enhancer Flanking Active TSS Strong transcription Active TSS Transcr. at gene 5' and 3' Bivalent/Poised TSS ZNF genes & repeats | TF binding regionCpG islandChromatin interactive regionlncRNAmiRNAmiRNA target site | 201 gene(s) | inside rSNPs | diseases |
| 2 | nsv1019145 | chr6:44313576-44421440 | Weak transcription Strong transcription Enhancers ZNF genes & repeats Genic enhancers Flanking Active TSS Active TSS Transcr. at gene 5' and 3' Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh | TF binding regionCpG islandChromatin interactive regionlncRNAmiRNAmiRNA target site | 18 gene(s) | inside rSNPs | diseases |
| No data |
Chromatin state (count:0 , 50 per page) page:
| No data |
