Variant report

Variant	rs994736
Chromosome Location	chr6:44351054-44351055
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 20 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:19)

rs_ID	r²[population]
rs12197830	0.95[AFR][1000 genomes]
rs1293207	1.00[YRI][hapmap]
rs1293209	0.85[YRI][hapmap]
rs1473563	1.00[YRI][hapmap];0.95[AFR][1000 genomes]
rs1473564	1.00[YRI][hapmap];0.95[AFR][1000 genomes]
rs2754769	1.00[YRI][hapmap]
rs4714786	0.87[YRI][hapmap]
rs490814	1.00[YRI][hapmap]
rs6458383	1.00[YRI][hapmap]
rs6458384	1.00[YRI][hapmap]
rs6458385	1.00[YRI][hapmap]
rs6908640	1.00[YRI][hapmap]
rs6912195	1.00[YRI][hapmap]
rs6931374	1.00[YRI][hapmap];0.86[AFR][1000 genomes]
rs7747178	0.85[YRI][hapmap];0.90[AFR][1000 genomes]
rs7757621	1.00[YRI][hapmap]
rs856597	1.00[YRI][hapmap]
rs9296429	0.90[AFR][1000 genomes]
rs9472254	0.86[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1019145	chr6:44313576-44421440	Weak transcription Strong transcription Enhancers ZNF genes & repeats Genic enhancers Flanking Active TSS Active TSS Transcr. at gene 5' and 3' Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	18 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:14 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:44341800-44354600	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
2	chr6:44343200-44351600	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
3	chr6:44346600-44354200	Weak transcription	HepG2	liver
4	chr6:44348800-44354400	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
5	chr6:44349000-44354200	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
6	chr6:44350000-44354200	Weak transcription	Primary hematopoietic stem cells short term culture	blood
7	chr6:44350000-44354600	Weak transcription	Adipose Nuclei	Adipose
8	chr6:44350200-44351600	Enhancers	Liver	Liver
9	chr6:44350200-44354200	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
10	chr6:44350200-44354200	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
11	chr6:44350600-44354400	Weak transcription	Monocytes-CD14+_RO01746	blood
12	chr6:44350800-44354800	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
13	chr6:44351000-44354200	Weak transcription	Fetal Muscle Leg	muscle
14	chr6:44351000-44354400	Weak transcription	Primary monocytes fromperipheralblood	blood

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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