Variant report

Variant	rs6912373
Chromosome Location	chr6:143941123-143941124
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr6:143940682..143942289-chr6:143942415..143944107,2	MCF-7	breast:
2	chr6:143933160..143936004-chr6:143939923..143941547,2	K562	blood:
3	chr6:143936810..143939021-chr6:143939704..143941251,2	K562	blood:

Extended variants
information (count: 16 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:12)

rs_ID	r²[population]
rs13194278	0.92[JPT][hapmap]
rs6570569	0.84[MEX][hapmap]
rs6905279	1.00[CEU][hapmap];0.86[CHB][hapmap];1.00[JPT][hapmap];0.86[AMR][1000 genomes];0.96[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs7744358	0.92[JPT][hapmap]
rs7745786	0.86[AMR][1000 genomes];0.95[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs7760627	0.92[JPT][hapmap]
rs7760733	0.92[JPT][hapmap]
rs7766319	0.86[AMR][1000 genomes];0.96[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs9484792	0.92[JPT][hapmap]
rs9496707	1.00[CEU][hapmap];0.86[CHB][hapmap];0.95[GIH][hapmap];1.00[JPT][hapmap];0.91[MEX][hapmap];1.00[TSI][hapmap];0.85[AMR][1000 genomes];0.96[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs9496708	1.00[CEU][hapmap];0.86[CHB][hapmap];1.00[JPT][hapmap];0.85[AMR][1000 genomes];0.96[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs954349	1.00[CEU][hapmap];0.86[CHB][hapmap];0.95[GIH][hapmap];1.00[JPT][hapmap];0.91[MEX][hapmap];1.00[TSI][hapmap];0.86[AMR][1000 genomes];0.95[EUR][1000 genomes];0.96[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv2758084	chr6:143916621-144079976	Weak transcription Enhancers Genic enhancers Strong transcription Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
2	esv2759476	chr6:143916621-144079976	Enhancers Weak transcription Flanking Bivalent TSS/Enh Strong transcription Flanking Active TSS Active TSS ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
3	nsv1032369	chr6:143925374-144007513	Weak transcription Flanking Active TSS ZNF genes & repeats Enhancers Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS Strong transcription Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
4	nsv604805	chr6:143930404-144005949	Weak transcription Bivalent/Poised TSS Active TSS Enhancers Flanking Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent Enhancer Transcr. at gene 5' and 3' Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:33 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:143917000-143973600	Weak transcription	Fetal Intestine Small	intestine
2	chr6:143917200-143941400	Weak transcription	Fetal Intestine Large	intestine
3	chr6:143929600-143941800	Weak transcription	Esophagus	oesophagus
4	chr6:143929600-143943400	Weak transcription	Left Ventricle	heart
5	chr6:143930400-143949400	Weak transcription	H9 Cell Line	embryonic stem cell
6	chr6:143930800-143946600	Weak transcription	Primary T cells from cord blood	blood
7	chr6:143935600-143942400	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
8	chr6:143935600-143946600	Weak transcription	Primary T helper cells fromperipheralblood	blood
9	chr6:143936000-143941400	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
10	chr6:143936000-143941400	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
11	chr6:143936400-143946200	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
12	chr6:143937000-143946600	Weak transcription	Duodenum Mucosa	Duodenum
13	chr6:143937000-143947000	Weak transcription	Primary T regulatory cells fromperipheralblood	blood
14	chr6:143938000-143941800	Weak transcription	Aorta	Aorta
15	chr6:143938200-143941800	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
16	chr6:143938200-143942800	Weak transcription	HUES6 Cell Line	embryonic stem cell
17	chr6:143939000-143955800	Weak transcription	Stomach Mucosa	stomach
18	chr6:143939600-143946200	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
19	chr6:143940000-143943800	Enhancers	Placenta	Placenta
20	chr6:143940400-143942200	Enhancers	Duodenum Smooth Muscle	Duodenum
21	chr6:143940600-143942200	Enhancers	Fetal Lung	lung
22	chr6:143940600-143942200	Enhancers	HepG2	liver
23	chr6:143940600-143943600	Enhancers	Fetal Stomach	stomach
24	chr6:143940800-143941200	Enhancers	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
25	chr6:143940800-143942000	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
26	chr6:143940800-143942200	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
27	chr6:143940800-143942400	Enhancers	Primary monocytes fromperipheralblood	blood
28	chr6:143940800-143942400	Enhancers	Colon Smooth Muscle	Colon
29	chr6:143941000-143941200	Enhancers	Gastric	stomach
30	chr6:143941000-143941200	Flanking Active TSS	Stomach Smooth Muscle	stomach
31	chr6:143941000-143941400	Enhancers	Monocytes-CD14+_RO01746	blood
32	chr6:143941000-143942600	Enhancers	Fetal Muscle Leg	muscle
33	chr6:143941000-143943800	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung

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