Variant report

Variant	rs7760627
Chromosome Location	chr6:144001128-144001129
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr6:144000686..144002814-chr6:144004185..144006059,2	K562	blood:
2	chr6:143999648..144001739-chr6:144006166..144008073,2	K562	blood:
3	chr6:143999802..144002439-chr6:144003209..144005357,2	MCF-7	breast:

Extended variants
information (count: 41 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:37)

rs_ID	r²[population]
rs10046128	0.83[YRI][hapmap]
rs11155313	0.84[CEU][hapmap];0.83[EUR][1000 genomes]
rs11155314	0.83[CEU][hapmap];0.84[EUR][1000 genomes]
rs11755709	0.81[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs12192231	0.82[EUR][1000 genomes]
rs12195857	0.84[CEU][hapmap];0.84[EUR][1000 genomes]
rs12196077	0.83[EUR][1000 genomes]
rs12196139	0.84[EUR][1000 genomes]
rs12197559	0.83[CEU][hapmap];0.84[EUR][1000 genomes]
rs12200984	0.83[EUR][1000 genomes]
rs12209146	0.84[EUR][1000 genomes]
rs12209438	0.84[EUR][1000 genomes]
rs12211387	0.81[EUR][1000 genomes]
rs12524982	1.00[CHB][hapmap]
rs12525974	1.00[CHB][hapmap]
rs12527275	1.00[CHB][hapmap]
rs12530178	1.00[CHB][hapmap]
rs13192672	1.00[CHB][hapmap]
rs13193972	0.83[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs13194278	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.93[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13204654	0.80[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13213864	0.95[EUR][1000 genomes]
rs13214196	0.90[CHB][hapmap]
rs1338534	0.84[CEU][hapmap];0.83[EUR][1000 genomes]
rs17291151	1.00[CHB][hapmap]
rs1884172	1.00[CHB][hapmap]
rs2328507	0.90[CHB][hapmap]
rs6905279	0.92[JPT][hapmap]
rs6912373	0.92[JPT][hapmap]
rs6914096	0.90[EUR][1000 genomes]
rs6932482	0.90[CHB][hapmap]
rs7744358	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7760733	1.00[CEU][hapmap];1.00[JPT][hapmap];0.85[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs9484792	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9496707	0.92[JPT][hapmap]
rs9496708	0.93[JPT][hapmap]
rs954349	0.92[JPT][hapmap]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv2758084	chr6:143916621-144079976	Weak transcription Enhancers Genic enhancers Strong transcription Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
2	esv2759476	chr6:143916621-144079976	Enhancers Weak transcription Flanking Bivalent TSS/Enh Strong transcription Flanking Active TSS Active TSS ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
3	nsv1032369	chr6:143925374-144007513	Weak transcription Flanking Active TSS ZNF genes & repeats Enhancers Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS Strong transcription Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
4	nsv604805	chr6:143930404-144005949	Weak transcription Bivalent/Poised TSS Active TSS Enhancers Flanking Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent Enhancer Transcr. at gene 5' and 3' Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:81 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:143997600-144001800	Active TSS	Aorta	Aorta
2	chr6:143998200-144002800	Active TSS	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
3	chr6:143998400-144001600	Active TSS	Fetal Muscle Trunk	muscle
4	chr6:143998400-144001800	Active TSS	Fetal Muscle Leg	muscle
5	chr6:143998600-144001200	Active TSS	ES-I3 Cell Line	embryonic stem cell
6	chr6:143998600-144001400	Active TSS	Breast Myoepithelial Primary Cells	Breast
7	chr6:143998600-144001400	Active TSS	Foreskin Fibroblast Primary Cells skin02	Skin
8	chr6:143998600-144001400	Active TSS	Fetal Kidney	kidney
9	chr6:143998600-144001600	Active TSS	IMR90 fetal lung fibroblasts Cell Line	lung
10	chr6:143998600-144001600	Active TSS	Rectal Mucosa Donor 29	rectum
11	chr6:143998600-144001800	Active TSS	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
12	chr6:143998600-144002000	Active TSS	H1 Cell Line	embryonic stem cell
13	chr6:143998600-144002000	Active TSS	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
14	chr6:143998600-144002000	Active TSS	Foreskin Fibroblast Primary Cells skin01	Skin
15	chr6:143998600-144002000	Active TSS	Pancreatic Islets	Pancreatic Islet
16	chr6:143998600-144002000	Active TSS	Right Ventricle	heart
17	chr6:143998600-144002000	Active TSS	NHDF-Ad	bronchial
18	chr6:143998600-144002200	Active TSS	Stomach Smooth Muscle	stomach
19	chr6:143998600-144002400	Active TSS	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
20	chr6:143998800-144001200	Active TSS	Muscle Satellite Cultured Cells	--
21	chr6:143998800-144001200	Active TSS	Fetal Lung	lung
22	chr6:143998800-144001400	Active TSS	Foreskin Keratinocyte Primary Cells skin02	Skin
23	chr6:143998800-144001400	Active TSS	Fetal Stomach	stomach
24	chr6:143998800-144001400	Active TSS	HSMM	muscle
25	chr6:143998800-144001600	Active TSS	Hela-S3	cervix
26	chr6:143998800-144001800	Active TSS	Psoas Muscle	Psoas
27	chr6:143998800-144001800	Active TSS	HSMMtube	muscle
28	chr6:143998800-144002000	Active TSS	Placenta	Placenta
29	chr6:143998800-144002000	Active TSS	Ovary	ovary
30	chr6:143998800-144002200	Active TSS	Duodenum Smooth Muscle	Duodenum
31	chr6:143999000-144001200	Active TSS	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
32	chr6:143999000-144001600	Active TSS	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
33	chr6:143999000-144001600	Active TSS	ES-UCSF4 Cell Line	embryonic stem cell
34	chr6:143999600-144003000	Active TSS	Right Atrium	heart
35	chr6:143999800-144003400	Weak transcription	Gastric	stomach
36	chr6:144000000-144003400	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
37	chr6:144000000-144005600	Weak transcription	Small Intestine	intestine
38	chr6:144000200-144001400	Enhancers	Primary T helper cells PMA-I stimulated	--
39	chr6:144000200-144001600	Flanking Active TSS	iPS-18 Cell Line	embryonic stem cell
40	chr6:144000200-144001800	Flanking Active TSS	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
41	chr6:144000200-144002200	Flanking Active TSS	Adipose Nuclei	Adipose
42	chr6:144000400-144001200	Enhancers	Primary T helper naive cells fromperipheralblood	blood
43	chr6:144000400-144001600	Flanking Active TSS	H9 Derived Neuron Cultured Cells	ES cell derived
44	chr6:144000400-144001600	Flanking Active TSS	HepG2	liver
45	chr6:144000400-144001800	Flanking Active TSS	HUES64 Cell Line	embryonic stem cell
46	chr6:144000400-144003400	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
47	chr6:144000600-144001200	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
48	chr6:144000600-144001200	Active TSS	Skeletal Muscle Female	skeletal muscle
49	chr6:144000600-144001400	Enhancers	Primary hematopoietic stem cells short term culture	blood
50	chr6:144000600-144001400	Weak transcription	Left Ventricle	heart

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