Variant report

Variant	rs17291151
Chromosome Location	chr6:143974083-143974084
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr6:143966000..143968139-chr6:143973368..143975325,2	MCF-7	breast:

Extended variants
information (count: 45 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:40)

rs_ID	r²[population]
rs11155311	0.89[JPT][hapmap]
rs11755709	0.91[ASN][1000 genomes]
rs12192270	0.89[CEU][hapmap];0.91[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs12193892	0.93[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs12197980	0.93[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs12199447	0.93[AMR][1000 genomes];0.90[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12200809	0.95[ASN][1000 genomes]
rs12524982	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.84[AMR][1000 genomes];0.98[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs12525281	1.00[JPT][hapmap];0.86[ASN][1000 genomes]
rs12525974	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.82[AMR][1000 genomes];0.98[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs12527275	0.86[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.85[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs12530178	1.00[CHB][hapmap];0.89[JPT][hapmap];0.85[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs13191026	0.88[JPT][hapmap]
rs13192672	0.86[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.84[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs13193972	0.91[ASN][1000 genomes]
rs13194278	1.00[CHB][hapmap]
rs13199178	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13214196	0.85[CEU][hapmap];0.89[CHB][hapmap];1.00[JPT][hapmap];0.85[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs13219740	0.95[ASN][1000 genomes]
rs1338535	0.89[JPT][hapmap]
rs1539333	0.86[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs1884172	0.85[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.85[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs2051009	0.89[JPT][hapmap];0.82[ASN][1000 genomes]
rs2328506	0.80[AMR][1000 genomes]
rs2328507	0.89[CHB][hapmap];0.82[EUR][1000 genomes]
rs34196129	0.82[EUR][1000 genomes]
rs34775537	0.95[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs35286147	0.86[AMR][1000 genomes];0.80[EUR][1000 genomes]
rs35296418	0.80[AMR][1000 genomes]
rs4424099	0.86[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs56392216	0.86[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs62427376	0.95[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs62427377	0.91[AMR][1000 genomes];0.97[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs6932482	0.85[CEU][hapmap];0.89[CHB][hapmap];1.00[JPT][hapmap];0.83[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs7744358	1.00[CHB][hapmap]
rs7760627	1.00[CHB][hapmap]
rs9484792	1.00[CHB][hapmap]
rs9484795	1.00[JPT][hapmap]
rs9496738	0.84[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs9496740	1.00[JPT][hapmap]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv2758084	chr6:143916621-144079976	Weak transcription Enhancers Genic enhancers Strong transcription Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
2	esv2759476	chr6:143916621-144079976	Enhancers Weak transcription Flanking Bivalent TSS/Enh Strong transcription Flanking Active TSS Active TSS ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
3	nsv1032369	chr6:143925374-144007513	Weak transcription Flanking Active TSS ZNF genes & repeats Enhancers Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS Strong transcription Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
4	nsv604805	chr6:143930404-144005949	Weak transcription Bivalent/Poised TSS Active TSS Enhancers Flanking Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent Enhancer Transcr. at gene 5' and 3' Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
5	nsv517253	chr6:143953672-143975157	Weak transcription Enhancers Active TSS Flanking Active TSS	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:45 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:143959000-143978400	Weak transcription	Left Ventricle	heart
2	chr6:143969200-143974600	Weak transcription	Monocytes-CD14+_RO01746	blood
3	chr6:143969800-143974400	Weak transcription	Placenta	Placenta
4	chr6:143970400-143974200	Weak transcription	Spleen	Spleen
5	chr6:143972800-143974200	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
6	chr6:143973000-143980600	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
7	chr6:143973200-143974600	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
8	chr6:143973400-143974600	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
9	chr6:143973600-143974200	Enhancers	ES-I3 Cell Line	embryonic stem cell
10	chr6:143973600-143974400	Enhancers	H1 Cell Line	embryonic stem cell
11	chr6:143973600-143974400	Enhancers	Fetal Muscle Leg	muscle
12	chr6:143973600-143974400	Enhancers	Sigmoid Colon	Sigmoid Colon
13	chr6:143973600-143974600	Enhancers	HUES48 Cell Line	embryonic stem cell
14	chr6:143973600-143974600	Enhancers	Fetal Intestine Large	intestine
15	chr6:143973600-143974600	Enhancers	Stomach Mucosa	stomach
16	chr6:143973600-143974800	Enhancers	Fetal Intestine Small	intestine
17	chr6:143973600-143975000	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
18	chr6:143973600-143975000	Enhancers	Pancreatic Islets	Pancreatic Islet
19	chr6:143973800-143974200	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
20	chr6:143973800-143974200	Enhancers	Colonic Mucosa	Colon
21	chr6:143973800-143974200	Enhancers	Right Atrium	heart
22	chr6:143973800-143974400	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
23	chr6:143973800-143974400	Enhancers	Esophagus	oesophagus
24	chr6:143973800-143974400	Enhancers	Fetal Stomach	stomach
25	chr6:143973800-143974400	Enhancers	Gastric	stomach
26	chr6:143973800-143974400	Enhancers	Pancreas	Pancrea
27	chr6:143973800-143974400	Enhancers	Psoas Muscle	Psoas
28	chr6:143973800-143974600	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
29	chr6:143973800-143974600	Enhancers	Adipose Nuclei	Adipose
30	chr6:143973800-143974600	Enhancers	Rectal Mucosa Donor 31	rectum
31	chr6:143973800-143974600	Enhancers	Small Intestine	intestine
32	chr6:143973800-143974600	Enhancers	HepG2	liver
33	chr6:143973800-143974600	Enhancers	NHEK	skin
34	chr6:143973800-143974800	Enhancers	Rectal Mucosa Donor 29	rectum
35	chr6:143974000-143974200	Flanking Active TSS	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
36	chr6:143974000-143974200	Flanking Active TSS	Stomach Smooth Muscle	stomach
37	chr6:143974000-143974400	Enhancers	ES-WA7 Cell Line	embryonic stem cell
38	chr6:143974000-143974400	Enhancers	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
39	chr6:143974000-143974400	Enhancers	Aorta	Aorta
40	chr6:143974000-143974400	Flanking Active TSS	Duodenum Mucosa	Duodenum
41	chr6:143974000-143974400	Enhancers	Fetal Muscle Trunk	muscle
42	chr6:143974000-143974400	Enhancers	Skeletal Muscle Male	skeletal muscle
43	chr6:143974000-143974600	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
44	chr6:143974000-143974600	Enhancers	Duodenum Smooth Muscle	Duodenum
45	chr6:143974000-143974600	Enhancers	Fetal Lung	lung

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