Variant report

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr6:143977398..143979098-chr6:143982621..143985331,2	MCF-7	breast:

rSNPs within LD-proxies of this variant (count:32)

rs_ID	r²[population]
rs11155313	0.81[AMR][1000 genomes]
rs11155314	0.84[AMR][1000 genomes]
rs11755709	0.94[AFR][1000 genomes];0.94[AMR][1000 genomes];0.96[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs12192231	0.84[AMR][1000 genomes]
rs12195857	0.84[AMR][1000 genomes]
rs12196077	0.84[AMR][1000 genomes]
rs12196139	0.84[AMR][1000 genomes]
rs12197559	0.84[AMR][1000 genomes]
rs12199447	0.95[ASN][1000 genomes]
rs12200809	0.92[AMR][1000 genomes];0.89[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12200984	0.84[AMR][1000 genomes]
rs12209146	0.84[AMR][1000 genomes]
rs12209438	0.84[AMR][1000 genomes]
rs12211387	0.84[AMR][1000 genomes]
rs12524982	0.91[ASN][1000 genomes]
rs12525281	0.82[ASN][1000 genomes]
rs12525974	0.91[ASN][1000 genomes]
rs12527275	0.86[ASN][1000 genomes]
rs12530178	0.86[ASN][1000 genomes]
rs13192672	0.86[ASN][1000 genomes]
rs13193972	0.89[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs13199178	0.95[ASN][1000 genomes]
rs13204654	0.87[AMR][1000 genomes]
rs13214196	0.88[ASN][1000 genomes]
rs1338534	0.84[AMR][1000 genomes]
rs17291151	0.95[ASN][1000 genomes]
rs1884172	0.84[ASN][1000 genomes]
rs34775537	0.95[ASN][1000 genomes]
rs62427376	0.95[ASN][1000 genomes]
rs62427377	0.91[ASN][1000 genomes]
rs6932482	0.84[ASN][1000 genomes]
rs9496738	0.80[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv2758084	chr6:143916621-144079976	Weak transcription Enhancers Genic enhancers Strong transcription Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
2	esv2759476	chr6:143916621-144079976	Enhancers Weak transcription Flanking Bivalent TSS/Enh Strong transcription Flanking Active TSS Active TSS ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
3	nsv1032369	chr6:143925374-144007513	Weak transcription Flanking Active TSS ZNF genes & repeats Enhancers Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS Strong transcription Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
4	nsv604805	chr6:143930404-144005949	Weak transcription Bivalent/Poised TSS Active TSS Enhancers Flanking Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent Enhancer Transcr. at gene 5' and 3' Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:14 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:143959000-143978400	Weak transcription	Left Ventricle	heart
2	chr6:143973000-143980600	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
3	chr6:143974200-143981600	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
4	chr6:143974400-143978800	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
5	chr6:143974400-143978800	Weak transcription	Duodenum Mucosa	Duodenum
6	chr6:143974400-143980600	Weak transcription	Gastric	stomach
7	chr6:143974400-143980600	Weak transcription	Psoas Muscle	Psoas
8	chr6:143974600-143984400	Weak transcription	Fetal Intestine Large	intestine
9	chr6:143974800-143978600	Weak transcription	Fetal Intestine Small	intestine
10	chr6:143975000-143980600	Weak transcription	Pancreatic Islets	Pancreatic Islet
11	chr6:143975400-143980600	Weak transcription	Monocytes-CD14+_RO01746	blood
12	chr6:143976800-143978400	Weak transcription	ES-I3 Cell Line	embryonic stem cell
13	chr6:143977000-143982000	Weak transcription	Primary T killer memory cells from peripheral blood	blood
14	chr6:143978000-143982200	ZNF genes & repeats	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived

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