Variant report

Variant	rs62427376
Chromosome Location	chr6:143987722-143987723
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 31 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:27)

rs_ID	r²[population]
rs11755709	0.80[AMR][1000 genomes];0.91[ASN][1000 genomes]
rs12192270	0.87[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs12193892	0.89[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs12197980	0.89[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs12199447	0.89[AMR][1000 genomes];0.87[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12200809	0.95[ASN][1000 genomes]
rs12524982	0.84[AMR][1000 genomes];0.98[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs12525281	0.86[ASN][1000 genomes]
rs12525974	0.86[AMR][1000 genomes];0.98[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs12527275	0.86[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs12530178	0.86[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs13192672	0.85[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs13193972	0.91[ASN][1000 genomes]
rs13199178	0.95[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13214196	0.85[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs13219740	0.95[ASN][1000 genomes]
rs1539333	0.81[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs17291151	0.95[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1884172	0.86[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs2051009	0.82[ASN][1000 genomes]
rs34775537	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs35286147	0.82[AMR][1000 genomes]
rs4424099	0.82[AMR][1000 genomes]
rs56392216	0.82[AMR][1000 genomes]
rs62427377	1.00[AFR][1000 genomes];0.95[AMR][1000 genomes];0.99[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs6932482	0.84[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs9496738	0.85[EUR][1000 genomes];0.84[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv2758084	chr6:143916621-144079976	Weak transcription Enhancers Genic enhancers Strong transcription Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
2	esv2759476	chr6:143916621-144079976	Enhancers Weak transcription Flanking Bivalent TSS/Enh Strong transcription Flanking Active TSS Active TSS ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
3	nsv1032369	chr6:143925374-144007513	Weak transcription Flanking Active TSS ZNF genes & repeats Enhancers Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS Strong transcription Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
4	nsv604805	chr6:143930404-144005949	Weak transcription Bivalent/Poised TSS Active TSS Enhancers Flanking Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent Enhancer Transcr. at gene 5' and 3' Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:2 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:143980800-143994200	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
2	chr6:143981800-143994200	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast

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