Variant report

Variant	rs6912642
Chromosome Location	chr6:165658525-165658526
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 15 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:10)

rs_ID	r²[population]
rs1441895	1.00[ASN][1000 genomes]
rs55920154	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs56938864	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs66658946	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6908035	1.00[ASN][1000 genomes]
rs7740635	0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7744236	0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7751240	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7759780	0.94[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7771910	0.90[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv886925	chr6:165319631-165705488	Enhancers Flanking Active TSS Weak transcription Genic enhancers Active TSS Strong transcription ZNF genes & repeats Bivalent Enhancer Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	2 gene(s)	inside rSNPs	diseases
2	nsv432982	chr6:165528589-165835589	Active TSS Strong transcription Enhancers Weak transcription Bivalent Enhancer Bivalent/Poised TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Flanking Active TSS Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	3 gene(s)	inside rSNPs	diseases
3	nsv605245	chr6:165542686-165845903	Strong transcription Enhancers Weak transcription Active TSS ZNF genes & repeats Genic enhancers Flanking Active TSS Bivalent Enhancer Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	2 gene(s)	inside rSNPs	diseases
4	nsv1031648	chr6:165544569-165841029	Flanking Active TSS Enhancers Weak transcription Active TSS Strong transcription ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS Genic enhancers Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	2 gene(s)	inside rSNPs	diseases
5	nsv432983	chr6:165554403-165851585	Active TSS Flanking Active TSS Weak transcription Strong transcription Enhancers ZNF genes & repeats Genic enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:29 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:165656800-165659000	Enhancers	Brain Germinal Matrix	brain
2	chr6:165657000-165659000	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
3	chr6:165657200-165659000	Enhancers	Ganglion Eminence derived primary cultured neurospheres	brain
4	chr6:165657400-165659000	Enhancers	Cortex derived primary cultured neurospheres	brain
5	chr6:165657600-165659000	Enhancers	iPS-18 Cell Line	embryonic stem cell
6	chr6:165658000-165658600	Enhancers	iPS-20b Cell Line	embryonic stem cell
7	chr6:165658200-165658600	Flanking Active TSS	Brain Hippocampus Middle	brain
8	chr6:165658200-165658800	Enhancers	HUES64 Cell Line	embryonic stem cell
9	chr6:165658200-165658800	Enhancers	iPS-15b Cell Line	embryonic stem cell
10	chr6:165658200-165658800	Active TSS	Brain Substantia Nigra	brain
11	chr6:165658200-165659000	Enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
12	chr6:165658200-165659000	Enhancers	HUES48 Cell Line	embryonic stem cell
13	chr6:165658200-165659000	Enhancers	HUES6 Cell Line	embryonic stem cell
14	chr6:165658200-165659000	Flanking Active TSS	Brain Anterior Caudate	brain
15	chr6:165658200-165659400	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
16	chr6:165658200-165659600	Enhancers	Muscle Satellite Cultured Cells	--
17	chr6:165658200-165659600	Enhancers	HSMM	muscle
18	chr6:165658400-165658600	Flanking Active TSS	Brain Inferior Temporal Lobe	brain
19	chr6:165658400-165658600	Enhancers	Brain Dorsolateral Prefrontal Cortex	brain
20	chr6:165658400-165658800	Enhancers	iPS DF 19.11 Cell Line	embryonic stem cell
21	chr6:165658400-165658800	Enhancers	Skeletal Muscle Male	skeletal muscle
22	chr6:165658400-165658800	Flanking Active TSS	Dnd41	blood
23	chr6:165658400-165659000	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
24	chr6:165658400-165659000	Active TSS	Brain Angular Gyrus	brain
25	chr6:165658400-165659000	Flanking Active TSS	Brain Cingulate Gyrus	brain
26	chr6:165658400-165659000	Enhancers	Fetal Brain Male	brain
27	chr6:165658400-165659000	Enhancers	Fetal Muscle Trunk	muscle
28	chr6:165658400-165659000	Enhancers	Fetal Muscle Leg	muscle
29	chr6:165658400-165659400	Enhancers	NH-A	brain

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