Variant report

Variant	rs7751240
Chromosome Location	chr6:165645984-165645985
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 15 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:10)

rs_ID	r²[population]
rs1441895	1.00[ASN][1000 genomes]
rs55920154	0.81[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs56938864	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs66658946	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6908035	1.00[ASN][1000 genomes]
rs6912642	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7740635	0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7744236	0.88[AMR][1000 genomes];0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7759780	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7771910	0.90[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv886925	chr6:165319631-165705488	Enhancers Flanking Active TSS Weak transcription Genic enhancers Active TSS Strong transcription ZNF genes & repeats Bivalent Enhancer Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	2 gene(s)	inside rSNPs	diseases
2	nsv432982	chr6:165528589-165835589	Active TSS Strong transcription Enhancers Weak transcription Bivalent Enhancer Bivalent/Poised TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Flanking Active TSS Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	3 gene(s)	inside rSNPs	diseases
3	nsv605245	chr6:165542686-165845903	Strong transcription Enhancers Weak transcription Active TSS ZNF genes & repeats Genic enhancers Flanking Active TSS Bivalent Enhancer Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	2 gene(s)	inside rSNPs	diseases
4	nsv1031648	chr6:165544569-165841029	Flanking Active TSS Enhancers Weak transcription Active TSS Strong transcription ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS Genic enhancers Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	2 gene(s)	inside rSNPs	diseases
5	nsv432983	chr6:165554403-165851585	Active TSS Flanking Active TSS Weak transcription Strong transcription Enhancers ZNF genes & repeats Genic enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:25 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:165643800-165647200	Enhancers	Fetal Muscle Leg	muscle
2	chr6:165644400-165646200	Enhancers	HSMM	muscle
3	chr6:165644600-165646000	Enhancers	Muscle Satellite Cultured Cells	--
4	chr6:165644800-165646200	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
5	chr6:165645000-165647000	Enhancers	Fetal Brain Male	brain
6	chr6:165645000-165647600	Enhancers	Dnd41	blood
7	chr6:165645200-165646000	Active TSS	Brain Germinal Matrix	brain
8	chr6:165645200-165646000	Active TSS	Brain Inferior Temporal Lobe	brain
9	chr6:165645200-165646000	Active TSS	Brain Dorsolateral Prefrontal Cortex	brain
10	chr6:165645200-165646200	Active TSS	Brain Cingulate Gyrus	brain
11	chr6:165645200-165646400	Active TSS	Brain Anterior Caudate	brain
12	chr6:165645400-165646400	Flanking Active TSS	H9 Derived Neuron Cultured Cells	ES cell derived
13	chr6:165645600-165646000	Flanking Active TSS	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
14	chr6:165645600-165646000	Flanking Active TSS	Cortex derived primary cultured neurospheres	brain
15	chr6:165645600-165646000	Flanking Active TSS	Fetal Brain Female	brain
16	chr6:165645600-165646000	Flanking Active TSS	Skeletal Muscle Female	skeletal muscle
17	chr6:165645600-165646200	Flanking Active TSS	Ganglion Eminence derived primary cultured neurospheres	brain
18	chr6:165645600-165646200	Enhancers	Foreskin Melanocyte Primary Cells skin01	Skin
19	chr6:165645600-165646400	Enhancers	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
20	chr6:165645600-165646600	Enhancers	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
21	chr6:165645600-165646600	Flanking Active TSS	Brain Hippocampus Middle	brain
22	chr6:165645800-165646000	Active TSS	Brain Angular Gyrus	brain
23	chr6:165645800-165646000	Flanking Active TSS	Brain Substantia Nigra	brain
24	chr6:165645800-165646200	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
25	chr6:165645800-165646800	Enhancers	Skeletal Muscle Male	skeletal muscle

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