Variant report

Variant	rs6913628
Chromosome Location	chr6:132557410-132557411
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	6:132269655-132282174..6:132556576-132559814	GM12878	blood:
2	6:132182612-132191683..6:132556576-132559814	Hela-S3	cervix:

Variant related genes	Relation type
ENSG00000227220	Chromatin interaction
ENSG00000118523	Chromatin interaction
ENSG00000197594	Chromatin interaction

Extended variants
information (count: 8 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:6)

rs_ID	r²[population]
rs1406930	0.85[YRI][hapmap]
rs17061091	0.86[YRI][hapmap]
rs58615402	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs60568195	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs6916210	1.00[YRI][hapmap];0.85[AMR][1000 genomes]
rs9968837	1.00[YRI][hapmap];0.93[AFR][1000 genomes];1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv2762616	chr6:132404708-132584324	Enhancers Weak transcription Active TSS Flanking Active TSS Bivalent Enhancer ZNF genes & repeats Strong transcription Genic enhancers Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA	22 gene(s)	inside rSNPs	diseases
2	nsv1024527	chr6:132532941-132571889	Enhancers Weak transcription Flanking Active TSS Active TSS Bivalent Enhancer	Chromatin interactive region	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:27 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:132552200-132562400	Weak transcription	Psoas Muscle	Psoas
2	chr6:132553000-132557600	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
3	chr6:132553800-132557800	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
4	chr6:132555600-132558200	Enhancers	Muscle Satellite Cultured Cells	--
5	chr6:132555600-132558400	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
6	chr6:132555800-132557600	Enhancers	HUES48 Cell Line	embryonic stem cell
7	chr6:132556200-132558000	Weak transcription	Breast Myoepithelial Primary Cells	Breast
8	chr6:132556400-132558600	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
9	chr6:132556600-132557800	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
10	chr6:132556600-132558000	Flanking Active TSS	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
11	chr6:132556600-132558200	Enhancers	NHLF	lung
12	chr6:132556600-132558200	Enhancers	Osteobl	bone
13	chr6:132556800-132558200	Enhancers	HMEC	breast
14	chr6:132556800-132558200	Enhancers	HSMMtube	muscle
15	chr6:132556800-132558400	Enhancers	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
16	chr6:132557000-132558000	Enhancers	HSMM	muscle
17	chr6:132557000-132558200	Enhancers	NH-A	brain
18	chr6:132557000-132558400	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
19	chr6:132557000-132558800	Enhancers	iPS-20b Cell Line	embryonic stem cell
20	chr6:132557200-132557600	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
21	chr6:132557200-132558400	Enhancers	HUES6 Cell Line	embryonic stem cell
22	chr6:132557200-132558600	Enhancers	HUES64 Cell Line	embryonic stem cell
23	chr6:132557200-132558800	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
24	chr6:132557400-132557800	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
25	chr6:132557400-132557800	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
26	chr6:132557400-132558000	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
27	chr6:132557400-132558600	Enhancers	iPS-18 Cell Line	embryonic stem cell

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