Variant report

Variant	rs6913673
Chromosome Location	chr6:24713144-24713145
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr6:24711892..24724164-chr6:24769415..24786834,81	K562	blood:

Variant related genes	Relation type
ENSG00000112312	Chromatin interaction

Extended variants
information (count: 11 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:8)

rs_ID	r²[population]
rs17249980	1.00[AMR][1000 genomes]
rs57631782	1.00[AMR][1000 genomes]
rs6936817	1.00[AMR][1000 genomes]
rs73388273	1.00[AMR][1000 genomes]
rs73392557	1.00[AMR][1000 genomes]
rs73394539	1.00[AMR][1000 genomes]
rs7744770	1.00[AMR][1000 genomes]
rs9461058	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv3508002	chr6:24618580-24732946	Enhancers Strong transcription Genic enhancers Transcr. at gene 5' and 3' Weak transcription Flanking Active TSS Active TSS Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	82 gene(s)	inside rSNPs	diseases
2	esv3508003	chr6:24618580-24732946	Weak transcription Genic enhancers Strong transcription Enhancers Active TSS Transcr. at gene 5' and 3' Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	82 gene(s)	inside rSNPs	diseases
3	nsv830609	chr6:24712086-24896647	Weak transcription Enhancers Strong transcription Active TSS Bivalent Enhancer Transcr. at gene 5' and 3' Genic enhancers Flanking Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	68 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:127 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:24697800-24715800	Strong transcription	Fetal Thymus	thymus
2	chr6:24698200-24716200	Strong transcription	HUES64 Cell Line	embryonic stem cell
3	chr6:24698200-24716200	Strong transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
4	chr6:24698200-24716400	Strong transcription	HUES6 Cell Line	embryonic stem cell
5	chr6:24698200-24717400	Strong transcription	HUES48 Cell Line	embryonic stem cell
6	chr6:24698400-24717400	Strong transcription	iPS-18 Cell Line	embryonic stem cell
7	chr6:24698600-24715200	Weak transcription	Fetal Heart	heart
8	chr6:24698600-24716200	Strong transcription	iPS-20b Cell Line	embryonic stem cell
9	chr6:24698600-24716200	Weak transcription	Right Atrium	heart
10	chr6:24699000-24716600	Strong transcription	H9 Derived Neuron Cultured Cells	ES cell derived
11	chr6:24699000-24717400	Strong transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
12	chr6:24700000-24716800	Strong transcription	ES-UCSF4 Cell Line	embryonic stem cell
13	chr6:24700200-24713200	Weak transcription	Stomach Mucosa	stomach
14	chr6:24701200-24714200	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
15	chr6:24701400-24713200	Strong transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
16	chr6:24701400-24713200	Strong transcription	Fetal Intestine Large	intestine
17	chr6:24701400-24715400	Strong transcription	Rectal Mucosa Donor 31	rectum
18	chr6:24701400-24716800	Strong transcription	Placenta	Placenta
19	chr6:24701600-24714800	Strong transcription	HUVEC	blood vessel
20	chr6:24701600-24716200	Strong transcription	Primary hematopoietic stem cells short term culture	blood
21	chr6:24701600-24716200	Strong transcription	Stomach Smooth Muscle	stomach
22	chr6:24701600-24716200	Strong transcription	HMEC	breast
23	chr6:24701600-24716600	Strong transcription	Fetal Muscle Trunk	muscle
24	chr6:24701600-24716600	Strong transcription	Fetal Muscle Leg	muscle
25	chr6:24701800-24715400	Strong transcription	Ganglion Eminence derived primary cultured neurospheres	brain
26	chr6:24701800-24715600	Strong transcription	Osteobl	bone
27	chr6:24701800-24716200	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
28	chr6:24701800-24716800	Strong transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
29	chr6:24702200-24714800	Strong transcription	Sigmoid Colon	Sigmoid Colon
30	chr6:24702200-24715000	Strong transcription	NHLF	lung
31	chr6:24702200-24716400	Strong transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
32	chr6:24702200-24716600	Strong transcription	IMR90 fetal lung fibroblasts Cell Line	lung
33	chr6:24702600-24715000	Strong transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
34	chr6:24702600-24716000	Strong transcription	Cortex derived primary cultured neurospheres	brain
35	chr6:24702800-24716000	Strong transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
36	chr6:24702800-24716400	Strong transcription	Fetal Lung	lung
37	chr6:24702800-24716600	Strong transcription	Primary neutrophils fromperipheralblood	blood
38	chr6:24703000-24713200	Strong transcription	Skeletal Muscle Male	skeletal muscle
39	chr6:24703000-24714400	Strong transcription	Skeletal Muscle Female	skeletal muscle
40	chr6:24703000-24714800	Strong transcription	Foreskin Fibroblast Primary Cells skin01	Skin
41	chr6:24703000-24716200	Strong transcription	HSMM	muscle
42	chr6:24703000-24716200	Strong transcription	NH-A	brain
43	chr6:24703000-24717200	Strong transcription	H1 Cell Line	embryonic stem cell
44	chr6:24703200-24714000	Strong transcription	Muscle Satellite Cultured Cells	--
45	chr6:24703200-24716200	Strong transcription	NHDF-Ad	bronchial
46	chr6:24703400-24716400	Strong transcription	Fetal Kidney	kidney
47	chr6:24703800-24713200	Strong transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
48	chr6:24703800-24718000	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
49	chr6:24704200-24714200	Strong transcription	Primary monocytes fromperipheralblood	blood
50	chr6:24704600-24715400	Strong transcription	Monocytes-CD14+_RO01746	blood

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