Variant report

Variant	rs9461058
Chromosome Location	chr6:24759173-24759174
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 15 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:12)

rs_ID	r²[population]
rs11968358	0.81[AFR][1000 genomes]
rs17249980	1.00[AMR][1000 genomes]
rs57631782	1.00[AMR][1000 genomes]
rs6913673	1.00[AMR][1000 genomes]
rs6936817	1.00[AMR][1000 genomes]
rs73388273	1.00[AMR][1000 genomes]
rs73392557	1.00[AMR][1000 genomes]
rs73394539	1.00[AMR][1000 genomes]
rs7744770	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs9461066	1.00[YRI][hapmap];0.82[AFR][1000 genomes]
rs9461070	0.82[AFR][1000 genomes]
rs9467287	0.87[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv830609	chr6:24712086-24896647	Weak transcription Enhancers Strong transcription Active TSS Bivalent Enhancer Transcr. at gene 5' and 3' Genic enhancers Flanking Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	68 gene(s)	inside rSNPs	diseases
2	nsv428474	chr6:24714157-24797977	Weak transcription Flanking Active TSS Active TSS Genic enhancers Strong transcription Enhancers Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	65 gene(s)	inside rSNPs	diseases
3	nsv965630	chr6:24745410-24767271	Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS	TF binding region Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:3 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:24754000-24761400	Weak transcription	Stomach Mucosa	stomach
2	chr6:24756000-24761800	Weak transcription	Hela-S3	cervix
3	chr6:24757000-24761200	Weak transcription	K562	blood

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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