Variant report

Variant	rs691383
Chromosome Location	chr10:18241605-18241606
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 9 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:7)

rs_ID	r²[population]
rs1299188	0.84[ASN][1000 genomes]
rs473919	0.88[AMR][1000 genomes];0.93[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs571979	0.94[ASN][1000 genomes]
rs691513	0.88[ASN][1000 genomes]
rs691563	0.94[AMR][1000 genomes];0.94[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs692239	0.89[ASN][1000 genomes]
rs692635	0.86[AFR][1000 genomes];0.99[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv2755188	chr10:17881747-18292594	Enhancers Weak transcription Active TSS Flanking Active TSS ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA	9 gene(s)	inside rSNPs	diseases
2	esv3415320	chr10:18122232-18333356	Enhancers Weak transcription Flanking Active TSS Active TSS Bivalent Enhancer ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	6 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:13 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:18239200-18244200	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
2	chr10:18240200-18242400	Enhancers	Cortex derived primary cultured neurospheres	brain
3	chr10:18240600-18242200	Enhancers	Osteobl	bone
4	chr10:18240600-18242400	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
5	chr10:18241000-18242000	Weak transcription	HUES48 Cell Line	embryonic stem cell
6	chr10:18241000-18243000	Active TSS	Brain Anterior Caudate	brain
7	chr10:18241200-18242000	Weak transcription	NH-A	brain
8	chr10:18241200-18242200	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
9	chr10:18241200-18242200	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
10	chr10:18241200-18242400	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
11	chr10:18241200-18243200	Weak transcription	Muscle Satellite Cultured Cells	--
12	chr10:18241200-18243800	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
13	chr10:18241200-18244000	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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