Variant report

Variant	rs692635
Chromosome Location	chr10:18243863-18243864
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 9 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:7)

rs_ID	r²[population]
rs1299188	0.92[AMR][1000 genomes];0.88[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs473919	0.98[ASN][1000 genomes]
rs571979	0.84[AFR][1000 genomes];0.94[AMR][1000 genomes];0.94[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs691383	0.86[AFR][1000 genomes];0.99[ASN][1000 genomes]
rs691513	0.91[AMR][1000 genomes];0.88[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs691563	0.85[ASN][1000 genomes]
rs692239	0.86[AFR][1000 genomes];0.89[AMR][1000 genomes];0.91[EUR][1000 genomes];0.88[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv2755188	chr10:17881747-18292594	Enhancers Weak transcription Active TSS Flanking Active TSS ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA	9 gene(s)	inside rSNPs	diseases
2	esv3415320	chr10:18122232-18333356	Enhancers Weak transcription Flanking Active TSS Active TSS Bivalent Enhancer ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	6 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:8 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:18239200-18244200	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
2	chr10:18241200-18244000	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
3	chr10:18242200-18244000	Weak transcription	NH-A	brain
4	chr10:18242400-18246200	Weak transcription	Cortex derived primary cultured neurospheres	brain
5	chr10:18242600-18246600	Weak transcription	Brain Substantia Nigra	brain
6	chr10:18242600-18248800	Weak transcription	Brain Hippocampus Middle	brain
7	chr10:18243400-18244200	Enhancers	NHDF-Ad	bronchial
8	chr10:18243800-18244600	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived

Quick Search:

Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

what's new

Quick links