Variant report

Variant	rs6915007
Chromosome Location	chr6:34922193-34922194
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 10 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:3)

rs_ID	r²[population]
rs6923894	1.00[CEU][hapmap]
rs6935722	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7753608	1.00[CEU][hapmap];1.00[YRI][hapmap];0.93[AFR][1000 genomes];1.00[AMR][1000 genomes];0.90[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:7 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1022844	chr6:34317219-35060519	Weak transcription Genic enhancers Enhancers Active TSS Flanking Active TSS Strong transcription Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	67 gene(s)	inside rSNPs	diseases
2	nsv538195	chr6:34317219-35060519	Enhancers Strong transcription Bivalent/Poised TSS Transcr. at gene 5' and 3' Weak transcription Genic enhancers Active TSS Bivalent Enhancer Flanking Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	67 gene(s)	inside rSNPs	diseases
3	esv2763967	chr6:34566255-34925463	Weak transcription Active TSS Flanking Active TSS Enhancers Strong transcription Genic enhancers Bivalent Enhancer Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	42 gene(s)	inside rSNPs	diseases
4	nsv1026121	chr6:34786887-34961360	Weak transcription Enhancers Strong transcription Active TSS Genic enhancers Flanking Active TSS ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region miRNA target site	19 gene(s)	inside rSNPs	diseases
5	nsv885797	chr6:34791027-34980601	Enhancers Strong transcription Weak transcription Flanking Active TSS Bivalent/Poised TSS Genic enhancers Active TSS Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region miRNA target site	18 gene(s)	inside rSNPs	diseases
6	nsv1033135	chr6:34802652-34957093	Weak transcription Strong transcription Flanking Active TSS Enhancers Genic enhancers Bivalent Enhancer Active TSS Bivalent/Poised TSS Transcr. at gene 5' and 3' ZNF genes & repeats Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region miRNA target site	18 gene(s)	inside rSNPs	diseases
7	nsv508402	chr6:34840961-34951288	Weak transcription Flanking Active TSS Strong transcription Enhancers Genic enhancers Active TSS Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region miRNA target site	17 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:89 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:34881200-34928200	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
2	chr6:34886400-34923400	Weak transcription	Primary T cells from cord blood	blood
3	chr6:34889600-34923400	Weak transcription	Primary B cells from cord blood	blood
4	chr6:34895800-34949200	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
5	chr6:34896000-34934600	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
6	chr6:34902600-34922400	Weak transcription	Brain Germinal Matrix	brain
7	chr6:34903200-34927800	Weak transcription	Fetal Muscle Trunk	muscle
8	chr6:34903400-34923200	Weak transcription	Primary B cells from peripheral blood	blood
9	chr6:34904600-34937400	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
10	chr6:34907400-34937600	Weak transcription	Dnd41	blood
11	chr6:34907600-34923200	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
12	chr6:34907800-34922400	Weak transcription	Monocytes-CD14+_RO01746	blood
13	chr6:34912400-34928000	Weak transcription	Primary T helper cells fromperipheralblood	blood
14	chr6:34915800-34926600	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
15	chr6:34916800-34927800	Weak transcription	Lung	lung
16	chr6:34917200-34926800	Weak transcription	Spleen	Spleen
17	chr6:34918200-34923200	Weak transcription	Primary neutrophils fromperipheralblood	blood
18	chr6:34918600-34938400	Weak transcription	Thymus	Thymus
19	chr6:34918800-34924400	Weak transcription	Psoas Muscle	Psoas
20	chr6:34919000-34929600	Weak transcription	Fetal Kidney	kidney
21	chr6:34919200-34922400	Enhancers	Fetal Intestine Small	intestine
22	chr6:34919200-34922600	Enhancers	HepG2	liver
23	chr6:34919600-34922600	Enhancers	Fetal Intestine Large	intestine
24	chr6:34919600-34922800	Enhancers	Duodenum Mucosa	Duodenum
25	chr6:34919600-34923200	Weak transcription	Primary T helper cells PMA-I stimulated	--
26	chr6:34919600-34926400	Enhancers	Fetal Adrenal Gland	Adrenal Gland
27	chr6:34919800-34937200	Weak transcription	NHEK	skin
28	chr6:34920000-34922200	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
29	chr6:34920000-34922600	Enhancers	Stomach Mucosa	stomach
30	chr6:34920000-34923600	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
31	chr6:34920000-34925800	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
32	chr6:34920000-34937400	Weak transcription	H9 Cell Line	embryonic stem cell
33	chr6:34920000-34937400	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
34	chr6:34920400-34958600	Weak transcription	Colonic Mucosa	Colon
35	chr6:34920800-34922200	Enhancers	Brain Cingulate Gyrus	brain
36	chr6:34920800-34922400	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
37	chr6:34920800-34922400	Enhancers	Rectal Mucosa Donor 31	rectum
38	chr6:34920800-34922600	Enhancers	Adipose Nuclei	Adipose
39	chr6:34920800-34922600	Enhancers	Rectal Mucosa Donor 29	rectum
40	chr6:34920800-34925400	Weak transcription	Small Intestine	intestine
41	chr6:34921000-34922200	Enhancers	Cortex derived primary cultured neurospheres	brain
42	chr6:34921000-34922200	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
43	chr6:34921000-34922200	Flanking Active TSS	A549	lung
44	chr6:34921000-34922200	Enhancers	NHDF-Ad	bronchial
45	chr6:34921000-34922200	Enhancers	Osteobl	bone
46	chr6:34921000-34922400	Enhancers	Ganglion Eminence derived primary cultured neurospheres	brain
47	chr6:34921000-34922400	Enhancers	Liver	Liver
48	chr6:34921000-34922400	Enhancers	Right Atrium	heart
49	chr6:34921000-34922600	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
50	chr6:34921000-34922600	Enhancers	Pancreatic Islets	Pancreatic Islet

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links