Variant report

Variant	rs6915138
Chromosome Location	chr6:82269979-82269980
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 7 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:6)

rs_ID	r²[population]
rs1341221	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs2153644	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs6900056	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs6915424	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs6932354	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7739429	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv604087	chr6:81792413-82326091	Enhancers Flanking Active TSS Weak transcription Active TSS ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:15 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:82261000-82271000	Weak transcription	Aorta	Aorta
2	chr6:82263400-82270800	Weak transcription	Muscle Satellite Cultured Cells	--
3	chr6:82264600-82270800	Weak transcription	Fetal Lung	lung
4	chr6:82266400-82270400	Weak transcription	Rectal Smooth Muscle	rectum
5	chr6:82266400-82270600	Weak transcription	iPS-20b Cell Line	embryonic stem cell
6	chr6:82266400-82270800	Weak transcription	Osteobl	bone
7	chr6:82266600-82270800	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
8	chr6:82266600-82270800	Weak transcription	HUES48 Cell Line	embryonic stem cell
9	chr6:82266600-82270800	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
10	chr6:82267000-82270600	Weak transcription	Colon Smooth Muscle	Colon
11	chr6:82267400-82271000	Weak transcription	Cortex derived primary cultured neurospheres	brain
12	chr6:82267600-82271400	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
13	chr6:82268000-82274400	Weak transcription	Placenta Amnion	Placenta Amnion
14	chr6:82268200-82270400	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
15	chr6:82268800-82270800	Weak transcription	Fetal Stomach	stomach

Quick Search:

Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

what's new

Quick links