Variant report

Variant	rs6915424
Chromosome Location	chr6:82277416-82277417
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr6:82271462..82274073-chr6:82275902..82278747,2	MCF-7	breast:

Extended variants
information (count: 77 )
Associated
traits (count: 1 )

rSNPs within LD-proxies of this variant (count:76)

rs_ID	r²[population]
rs1321763	1.00[EUR][1000 genomes]
rs1321764	1.00[EUR][1000 genomes]
rs1341221	1.00[CEU][hapmap];1.00[YRI][hapmap];0.99[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs1341223	1.00[CEU][hapmap]
rs16879669	1.00[EUR][1000 genomes]
rs16893157	1.00[EUR][1000 genomes]
rs16893196	1.00[EUR][1000 genomes]
rs16893200	1.00[EUR][1000 genomes]
rs16893204	1.00[EUR][1000 genomes]
rs16893220	1.00[EUR][1000 genomes]
rs181982	1.00[EUR][1000 genomes]
rs1857302	1.00[EUR][1000 genomes]
rs1923151	1.00[CEU][hapmap];1.00[EUR][1000 genomes]
rs1923152	1.00[EUR][1000 genomes]
rs1923153	1.00[EUR][1000 genomes]
rs1923154	1.00[EUR][1000 genomes]
rs2153644	1.00[ASW][hapmap];1.00[CEU][hapmap];1.00[LWK][hapmap];1.00[MEX][hapmap];1.00[MKK][hapmap];1.00[YRI][hapmap];0.99[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs2180771	1.00[CEU][hapmap];1.00[MEX][hapmap];1.00[EUR][1000 genomes]
rs2185587	1.00[CEU][hapmap];1.00[EUR][1000 genomes]
rs56139622	1.00[EUR][1000 genomes]
rs56347700	1.00[EUR][1000 genomes]
rs56354221	1.00[EUR][1000 genomes]
rs57540087	1.00[EUR][1000 genomes]
rs58348892	1.00[EUR][1000 genomes]
rs59561150	1.00[EUR][1000 genomes]
rs59828216	1.00[EUR][1000 genomes]
rs61279115	1.00[EUR][1000 genomes]
rs6900056	1.00[ASW][hapmap];1.00[CEU][hapmap];1.00[LWK][hapmap];1.00[MEX][hapmap];1.00[MKK][hapmap];1.00[YRI][hapmap];0.99[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs6903301	1.00[EUR][1000 genomes]
rs6903470	1.00[EUR][1000 genomes]
rs6903966	1.00[EUR][1000 genomes]
rs6904093	1.00[EUR][1000 genomes]
rs6904760	1.00[EUR][1000 genomes]
rs6905459	1.00[CEU][hapmap];1.00[EUR][1000 genomes]
rs6907542	1.00[EUR][1000 genomes]
rs6909563	1.00[EUR][1000 genomes]
rs6915138	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs6923049	1.00[EUR][1000 genomes]
rs6923636	1.00[EUR][1000 genomes]
rs6926893	1.00[EUR][1000 genomes]
rs6931780	1.00[EUR][1000 genomes]
rs6932354	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs6935793	1.00[EUR][1000 genomes]
rs73749103	1.00[EUR][1000 genomes]
rs73749105	1.00[EUR][1000 genomes]
rs73749107	1.00[EUR][1000 genomes]
rs73749108	1.00[EUR][1000 genomes]
rs73749122	1.00[EUR][1000 genomes]
rs73749125	1.00[EUR][1000 genomes]
rs73749126	1.00[EUR][1000 genomes]
rs73749127	1.00[EUR][1000 genomes]
rs73749128	1.00[EUR][1000 genomes]
rs73749130	1.00[EUR][1000 genomes]
rs73749131	1.00[EUR][1000 genomes]
rs73749132	1.00[EUR][1000 genomes]
rs73749134	1.00[EUR][1000 genomes]
rs73749135	1.00[EUR][1000 genomes]
rs73749136	1.00[EUR][1000 genomes]
rs73749137	1.00[EUR][1000 genomes]
rs73749138	1.00[EUR][1000 genomes]
rs73749139	1.00[EUR][1000 genomes]
rs73749140	1.00[EUR][1000 genomes]
rs73749141	1.00[EUR][1000 genomes]
rs73749142	1.00[EUR][1000 genomes]
rs73749183	1.00[EUR][1000 genomes]
rs73751432	1.00[EUR][1000 genomes]
rs73751433	1.00[EUR][1000 genomes]
rs73751439	1.00[EUR][1000 genomes]
rs73751440	1.00[EUR][1000 genomes]
rs73751441	1.00[EUR][1000 genomes]
rs73751443	1.00[EUR][1000 genomes]
rs73751445	1.00[EUR][1000 genomes]
rs7739429	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs9294236	1.00[CEU][hapmap];1.00[EUR][1000 genomes]
rs9688608	1.00[CEU][hapmap];1.00[EUR][1000 genomes]
rs9688618	1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv604087	chr6:81792413-82326091	Enhancers Flanking Active TSS Weak transcription Active TSS ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs6915424	TPBG	cis	lymphoblastoid	seeQTL

Chromatin state (count:3 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:82272600-82277800	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
2	chr6:82272600-82281400	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
3	chr6:82274200-82277800	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived

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