Variant report

Variant	rs9294236
Chromosome Location	chr6:82450092-82450093
allele	C/G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr6:82448675..82451514-chr6:82474859..82477314,2	MCF-7	breast:
2	chr6:82449873..82453287-chr6:82454959..82457628,4	K562	blood:

Extended variants
information (count: 23 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:22)

rs_ID	r²[population]
rs1341221	1.00[CEU][hapmap];1.00[EUR][1000 genomes]
rs1341223	1.00[CEU][hapmap]
rs16893196	1.00[EUR][1000 genomes]
rs16893200	1.00[EUR][1000 genomes]
rs16893204	1.00[EUR][1000 genomes]
rs16893220	1.00[EUR][1000 genomes]
rs16893690	1.00[EUR][1000 genomes]
rs181982	1.00[CEU][hapmap];1.00[EUR][1000 genomes]
rs194613	1.00[CEU][hapmap];1.00[EUR][1000 genomes]
rs194614	1.00[CEU][hapmap];1.00[EUR][1000 genomes]
rs2153644	1.00[CEU][hapmap];1.00[EUR][1000 genomes]
rs2185587	1.00[CEU][hapmap];1.00[EUR][1000 genomes]
rs34138673	0.91[YRI][hapmap]
rs4706911	1.00[CEU][hapmap];1.00[EUR][1000 genomes]
rs6900056	1.00[CEU][hapmap];1.00[EUR][1000 genomes]
rs6907542	1.00[EUR][1000 genomes]
rs6915424	1.00[EUR][1000 genomes]
rs6932354	1.00[EUR][1000 genomes]
rs6935793	1.00[EUR][1000 genomes]
rs73749183	1.00[EUR][1000 genomes]
rs7739429	1.00[EUR][1000 genomes]
rs9765890	1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv3433714	chr6:82449633-82452106	Weak transcription Enhancers Flanking Active TSS Genic enhancers	TF binding region Chromatin interactive region	2 gene(s)	inside rSNPs	n/a

No data

Chromatin state (count:24 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:82422800-82451800	Weak transcription	Aorta	Aorta
2	chr6:82437800-82459400	Weak transcription	Pancreas	Pancrea
3	chr6:82442000-82455000	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
4	chr6:82442000-82456200	Weak transcription	Small Intestine	intestine
5	chr6:82442600-82454400	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
6	chr6:82444800-82455600	Weak transcription	Rectal Mucosa Donor 31	rectum
7	chr6:82445800-82456400	Weak transcription	Stomach Smooth Muscle	stomach
8	chr6:82446000-82454400	Weak transcription	Duodenum Smooth Muscle	Duodenum
9	chr6:82446000-82455000	Weak transcription	Liver	Liver
10	chr6:82446000-82455400	Weak transcription	NHDF-Ad	bronchial
11	chr6:82446000-82459600	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
12	chr6:82446200-82453600	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
13	chr6:82446200-82453600	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
14	chr6:82446200-82454800	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
15	chr6:82446400-82451800	Weak transcription	Placenta	Placenta
16	chr6:82446400-82455000	Weak transcription	Sigmoid Colon	Sigmoid Colon
17	chr6:82447000-82455200	Weak transcription	Hela-S3	cervix
18	chr6:82448400-82455000	Weak transcription	Right Ventricle	heart
19	chr6:82448400-82456200	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
20	chr6:82449400-82456200	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
21	chr6:82449600-82458800	Weak transcription	Fetal Lung	lung
22	chr6:82449800-82454800	Weak transcription	Left Ventricle	heart
23	chr6:82450000-82450200	Enhancers	Pancreatic Islets	Pancreatic Islet
24	chr6:82450000-82451400	Weak transcription	Placenta Amnion	Placenta Amnion

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