Variant report

Variant	rs4706911
Chromosome Location	chr6:82544507-82544508
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr6:82461613..82463139-chr6:82544240..82547112,2	MCF-7	breast:
2	chr6:82535510..82539999-chr6:82542680..82545257,3	MCF-7	breast:

Variant related genes	Relation type
ENSG00000112773	Chromatin interaction

Extended variants
information (count: 8 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:7)

rs_ID	r²[population]
rs16893690	1.00[EUR][1000 genomes]
rs181982	1.00[CEU][hapmap];1.00[EUR][1000 genomes]
rs194613	1.00[CEU][hapmap];1.00[EUR][1000 genomes]
rs194614	1.00[CEU][hapmap];1.00[EUR][1000 genomes]
rs9294236	1.00[CEU][hapmap];1.00[EUR][1000 genomes]
rs9765890	1.00[EUR][1000 genomes]
rs9791375	1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv830712	chr6:82491029-82654531	Enhancers Flanking Active TSS Weak transcription Active TSS Bivalent Enhancer ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:27 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:82540600-82544600	Enhancers	Rectal Mucosa Donor 31	rectum
2	chr6:82541000-82544800	Enhancers	Fetal Intestine Large	intestine
3	chr6:82541200-82546000	Enhancers	Stomach Mucosa	stomach
4	chr6:82541400-82544600	Enhancers	Fetal Intestine Small	intestine
5	chr6:82543200-82544600	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
6	chr6:82543200-82544600	Enhancers	Pancreatic Islets	Pancreatic Islet
7	chr6:82543200-82544600	Enhancers	Placenta Amnion	Placenta Amnion
8	chr6:82543400-82544600	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
9	chr6:82543400-82544600	Enhancers	HSMM	muscle
10	chr6:82543400-82544600	Enhancers	HSMMtube	muscle
11	chr6:82543600-82544600	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
12	chr6:82543600-82544600	Enhancers	Hela-S3	cervix
13	chr6:82543600-82544800	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
14	chr6:82543800-82544600	Enhancers	Fetal Heart	heart
15	chr6:82543800-82544600	Enhancers	Placenta	Placenta
16	chr6:82543800-82544600	Enhancers	NH-A	brain
17	chr6:82544000-82544600	Enhancers	Ovary	ovary
18	chr6:82544000-82544600	Enhancers	Small Intestine	intestine
19	chr6:82544000-82547800	Weak transcription	Aorta	Aorta
20	chr6:82544200-82544600	Enhancers	Duodenum Smooth Muscle	Duodenum
21	chr6:82544200-82547600	Weak transcription	Fetal Lung	lung
22	chr6:82544400-82544600	Enhancers	Muscle Satellite Cultured Cells	--
23	chr6:82544400-82544600	Enhancers	NHDF-Ad	bronchial
24	chr6:82544400-82544600	Enhancers	Osteobl	bone
25	chr6:82544400-82547600	Weak transcription	Duodenum Mucosa	Duodenum
26	chr6:82544400-82547600	Weak transcription	HepG2	liver
27	chr6:82544400-82548000	Weak transcription	A549	lung

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