Variant report

Variant	rs16893690
Chromosome Location	chr6:82653886-82653887
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 10 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:9)

rs_ID	r²[population]
rs16893671	0.87[ASN][1000 genomes]
rs16893697	1.00[CHB][hapmap];1.00[JPT][hapmap];0.98[ASN][1000 genomes]
rs181982	1.00[CEU][hapmap];1.00[EUR][1000 genomes]
rs194613	1.00[CEU][hapmap];1.00[EUR][1000 genomes]
rs194614	1.00[CEU][hapmap];1.00[EUR][1000 genomes]
rs4706911	1.00[CEU][hapmap];1.00[EUR][1000 genomes]
rs9294236	1.00[EUR][1000 genomes]
rs9765890	1.00[EUR][1000 genomes]
rs9791375	1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv830712	chr6:82491029-82654531	Enhancers Flanking Active TSS Weak transcription Active TSS Bivalent Enhancer ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:4 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:82648800-82654600	Weak transcription	Pancreatic Islets	Pancreatic Islet
2	chr6:82650600-82660200	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
3	chr6:82651200-82660400	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
4	chr6:82652000-82655200	Weak transcription	Rectal Smooth Muscle	rectum

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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