Variant report

Variant	rs194613
Chromosome Location	chr6:82495172-82495173
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 14 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:13)

rs_ID	r²[population]
rs1034241	0.92[YRI][hapmap]
rs1291464	0.90[AFR][1000 genomes]
rs1291465	0.90[AFR][1000 genomes]
rs16893690	1.00[EUR][1000 genomes]
rs171836	0.87[AFR][1000 genomes]
rs181982	1.00[CEU][hapmap];1.00[EUR][1000 genomes]
rs194614	1.00[CEU][hapmap];1.00[YRI][hapmap];0.99[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs194631	0.96[YRI][hapmap];0.86[AFR][1000 genomes]
rs4706911	1.00[CEU][hapmap];1.00[EUR][1000 genomes]
rs7739429	1.00[EUR][1000 genomes]
rs9294236	1.00[CEU][hapmap];1.00[EUR][1000 genomes]
rs9443936	0.96[YRI][hapmap];0.86[AFR][1000 genomes]
rs9765890	1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv830712	chr6:82491029-82654531	Enhancers Flanking Active TSS Weak transcription Active TSS Bivalent Enhancer ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:9 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:82483000-82497400	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
2	chr6:82492000-82498400	Weak transcription	Sigmoid Colon	Sigmoid Colon
3	chr6:82494000-82496000	Weak transcription	HUES64 Cell Line	embryonic stem cell
4	chr6:82494400-82499000	Enhancers	Stomach Mucosa	stomach
5	chr6:82494600-82496000	Enhancers	Placenta Amnion	Placenta Amnion
6	chr6:82494600-82496400	Enhancers	Foreskin Melanocyte Primary Cells skin01	Skin
7	chr6:82494600-82499000	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
8	chr6:82494800-82498800	Enhancers	Rectal Mucosa Donor 31	rectum
9	chr6:82495000-82495200	Enhancers	HMEC	breast

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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