Variant report

Variant	rs1034241
Chromosome Location	chr6:82473953-82473954
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr6:82462433..82465260-chr6:82471408..82474584,3	K562	blood:
2	chr6:82460615..82464438-chr6:82472382..82478506,11	MCF-7	breast:

No.	lncRNA name	Chromosome Location	lncRNA alias
1	lnc-TPBG-6	chr6:82473928-82474220	NONHSAT113747

Variant related genes	Relation type
ENSG00000112773	Chromatin interaction

Extended variants
information (count: 29 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:29)

rs_ID	r²[population]
rs11961442	0.95[EUR][1000 genomes]
rs11969940	0.95[EUR][1000 genomes]
rs13192697	0.87[EUR][1000 genomes]
rs13212198	0.81[EUR][1000 genomes]
rs13214556	0.92[CEU][hapmap];0.98[EUR][1000 genomes]
rs16893463	0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs16893491	0.92[CEU][hapmap];1.00[GIH][hapmap];0.86[MEX][hapmap];1.00[TSI][hapmap];0.98[EUR][1000 genomes]
rs16893518	0.92[CEU][hapmap];0.95[EUR][1000 genomes]
rs16893523	0.91[EUR][1000 genomes]
rs16893524	0.96[EUR][1000 genomes]
rs16893526	0.92[CEU][hapmap];1.00[GIH][hapmap];0.86[MEX][hapmap];0.94[TSI][hapmap];0.96[EUR][1000 genomes]
rs16893572	0.81[EUR][1000 genomes]
rs194613	0.92[YRI][hapmap]
rs194614	0.92[YRI][hapmap]
rs194618	1.00[CEU][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs194620	0.93[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs194631	0.88[YRI][hapmap]
rs1999630	0.88[EUR][1000 genomes]
rs34411814	0.88[EUR][1000 genomes]
rs34696161	0.95[EUR][1000 genomes]
rs34723068	0.88[EUR][1000 genomes]
rs35039823	0.93[EUR][1000 genomes]
rs35392002	0.81[EUR][1000 genomes]
rs35419006	0.88[EUR][1000 genomes]
rs4476879	0.92[CEU][hapmap];0.86[EUR][1000 genomes]
rs56021267	0.96[EUR][1000 genomes]
rs6454240	0.92[CEU][hapmap];0.85[GIH][hapmap];0.89[TSI][hapmap];0.97[EUR][1000 genomes]
rs72899496	0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9443936	0.88[YRI][hapmap]

No data

Chromatin state (count:51 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:82463800-82476000	Weak transcription	Sigmoid Colon	Sigmoid Colon
2	chr6:82463800-82477000	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
3	chr6:82464000-82477000	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
4	chr6:82464400-82475800	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
5	chr6:82467200-82474000	Weak transcription	Primary hematopoietic stem cells short term culture	blood
6	chr6:82467400-82477000	Weak transcription	iPS-20b Cell Line	embryonic stem cell
7	chr6:82467800-82476200	Weak transcription	HUES6 Cell Line	embryonic stem cell
8	chr6:82468000-82476000	Weak transcription	Pancreatic Islets	Pancreatic Islet
9	chr6:82469800-82475600	Weak transcription	Fetal Intestine Small	intestine
10	chr6:82469800-82476200	Weak transcription	ES-I3 Cell Line	embryonic stem cell
11	chr6:82470000-82476200	Weak transcription	Rectal Mucosa Donor 31	rectum
12	chr6:82470600-82474200	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
13	chr6:82470600-82474200	Enhancers	NHDF-Ad	bronchial
14	chr6:82470800-82475800	Weak transcription	Fetal Intestine Large	intestine
15	chr6:82470800-82475800	Weak transcription	Small Intestine	intestine
16	chr6:82471000-82476000	Weak transcription	Stomach Mucosa	stomach
17	chr6:82471000-82476600	Weak transcription	Fetal Stomach	stomach
18	chr6:82471800-82475600	Weak transcription	A549	lung
19	chr6:82471800-82476000	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
20	chr6:82471800-82476000	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
21	chr6:82472000-82474000	Enhancers	Placenta	Placenta
22	chr6:82472000-82476000	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
23	chr6:82472000-82476200	Enhancers	Primary hematopoietic stem cells	blood
24	chr6:82472200-82476000	Weak transcription	HSMM	muscle
25	chr6:82472200-82476200	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
26	chr6:82472200-82476400	Weak transcription	NHEK	skin
27	chr6:82472400-82475600	Weak transcription	NH-A	brain
28	chr6:82472400-82476400	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
29	chr6:82472600-82475600	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
30	chr6:82472600-82475800	Weak transcription	Muscle Satellite Cultured Cells	--
31	chr6:82472600-82476000	Weak transcription	HMEC	breast
32	chr6:82472800-82475600	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
33	chr6:82472800-82475800	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
34	chr6:82472800-82476000	Weak transcription	Duodenum Smooth Muscle	Duodenum
35	chr6:82472800-82476400	Enhancers	HepG2	liver
36	chr6:82473000-82474600	Weak transcription	Primary neutrophils fromperipheralblood	blood
37	chr6:82473000-82476200	Weak transcription	Colon Smooth Muscle	Colon
38	chr6:82473200-82474400	Weak transcription	Hela-S3	cervix
39	chr6:82473200-82474400	Weak transcription	Monocytes-CD14+_RO01746	blood
40	chr6:82473200-82475600	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
41	chr6:82473200-82475600	Weak transcription	NHLF	lung
42	chr6:82473200-82475600	Weak transcription	Osteobl	bone
43	chr6:82473200-82476000	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
44	chr6:82473200-82476000	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
45	chr6:82473400-82474600	Weak transcription	Placenta Amnion	Placenta Amnion
46	chr6:82473400-82475800	Weak transcription	Breast Myoepithelial Primary Cells	Breast
47	chr6:82473400-82476000	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
48	chr6:82473800-82474000	Enhancers	Foreskin Melanocyte Primary Cells skin01	Skin
49	chr6:82473800-82474200	Enhancers	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
50	chr6:82473800-82475600	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin

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