Variant report

Variant	rs16893524
Chromosome Location	chr6:82508978-82508979
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr6:82475862..82476705-chr6:82508606..82509288,2	MCF-7	breast:
2	chr6:82476367..82477352-chr6:82508887..82509707,2	MCF-7	breast:
3	chr6:82508795..82509784-chr6:82525837..82526689,2	MCF-7	breast:
4	chr6:82507285..82509817-chr6:82524544..82526925,2	MCF-7	breast:
5	chr6:82497503..82499926-chr6:82508521..82510695,2	MCF-7	breast:

Extended variants
information (count: 36 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:35)

rs_ID	r²[population]
rs1034241	0.92[CEU][hapmap];0.96[EUR][1000 genomes]
rs11961442	0.98[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs11969940	0.98[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs13192697	0.87[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs13197670	0.83[EUR][1000 genomes]
rs13212198	0.84[EUR][1000 genomes]
rs13212500	0.81[AMR][1000 genomes]
rs13214556	1.00[CEU][hapmap];0.93[CHB][hapmap];1.00[JPT][hapmap];0.82[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs16893463	0.81[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs16893491	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.82[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs16893518	1.00[CEU][hapmap];1.00[CHB][hapmap];0.90[JPT][hapmap];0.98[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs16893523	0.95[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs16893526	1.00[CEU][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs16893572	0.81[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs16893614	0.83[EUR][1000 genomes]
rs1931646	0.83[EUR][1000 genomes]
rs194618	0.84[CEU][hapmap];0.96[EUR][1000 genomes]
rs194620	0.96[EUR][1000 genomes]
rs1999630	0.91[AMR][1000 genomes];0.91[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs34411814	0.91[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs34663254	0.83[EUR][1000 genomes]
rs34696161	0.95[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs34723068	0.91[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs35039823	0.93[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs35392002	0.81[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs35419006	0.91[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs35538583	0.83[EUR][1000 genomes]
rs4476879	1.00[CEU][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.90[AFR][1000 genomes];0.95[AMR][1000 genomes];0.89[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs56021267	0.82[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6454240	1.00[CEU][hapmap];1.00[CHB][hapmap];0.90[JPT][hapmap];0.96[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs66652550	0.83[EUR][1000 genomes]
rs72899496	0.81[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs9341901	0.82[YRI][hapmap]
rs9344225	0.80[YRI][hapmap]
rs9353031	0.82[YRI][hapmap]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv830712	chr6:82491029-82654531	Enhancers Flanking Active TSS Weak transcription Active TSS Bivalent Enhancer ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:3 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:82507600-82509800	Enhancers	Hela-S3	cervix
2	chr6:82507600-82513200	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
3	chr6:82508000-82511600	Weak transcription	Primary hematopoietic stem cells short term culture	blood

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