Variant report

Variant	rs13197670
Chromosome Location	chr6:82569884-82569885
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr6:82568233..82570114-chr6:82593375..82595093,2	MCF-7	breast:
2	chr6:82566803..82570893-chr6:82571199..82574802,4	K562	blood:

Extended variants
information (count: 29 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:28)

rs_ID	r²[population]
rs1034241	0.92[CEU][hapmap];0.94[GIH][hapmap];0.89[TSI][hapmap]
rs11961442	0.81[EUR][1000 genomes]
rs11969940	0.81[EUR][1000 genomes]
rs13212198	0.98[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs13212500	0.83[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs13214556	1.00[CEU][hapmap];1.00[JPT][hapmap];0.81[EUR][1000 genomes]
rs16893463	0.81[EUR][1000 genomes]
rs16893491	1.00[CEU][hapmap];0.94[GIH][hapmap];1.00[JPT][hapmap];0.85[MEX][hapmap];0.89[TSI][hapmap];0.81[EUR][1000 genomes]
rs16893518	1.00[CEU][hapmap];0.90[JPT][hapmap];0.81[EUR][1000 genomes]
rs16893524	0.83[EUR][1000 genomes]
rs16893526	1.00[CEU][hapmap];0.88[CHD][hapmap];0.94[GIH][hapmap];1.00[JPT][hapmap];0.85[MEX][hapmap];0.94[TSI][hapmap];0.83[EUR][1000 genomes]
rs16893572	0.83[AMR][1000 genomes];0.98[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs16893614	1.00[EUR][1000 genomes]
rs1931644	0.96[AFR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1931646	0.98[AFR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs194618	0.91[CEU][hapmap]
rs1999630	0.91[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs34411814	0.91[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs34663254	0.98[AFR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs34723068	0.91[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs35392002	0.83[AMR][1000 genomes];0.98[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs35419006	0.91[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs35538583	0.98[AFR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4476879	1.00[CEU][hapmap];1.00[JPT][hapmap];0.86[EUR][1000 genomes]
rs56021267	0.83[EUR][1000 genomes]
rs6454240	1.00[CEU][hapmap];0.90[JPT][hapmap]
rs66652550	0.98[AFR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs67263687	0.95[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv830712	chr6:82491029-82654531	Enhancers Flanking Active TSS Weak transcription Active TSS Bivalent Enhancer ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:15 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:82558200-82572000	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
2	chr6:82565600-82572200	Weak transcription	HepG2	liver
3	chr6:82568200-82573000	Weak transcription	Stomach Mucosa	stomach
4	chr6:82568800-82572200	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
5	chr6:82569000-82570000	Enhancers	Aorta	Aorta
6	chr6:82569000-82570000	Enhancers	Ovary	ovary
7	chr6:82569200-82572600	Weak transcription	Fetal Heart	heart
8	chr6:82569200-82572800	Weak transcription	HSMMtube	muscle
9	chr6:82569400-82570800	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
10	chr6:82569400-82570800	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
11	chr6:82569400-82571200	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
12	chr6:82569400-82572000	Enhancers	Muscle Satellite Cultured Cells	--
13	chr6:82569600-82570000	Enhancers	Primary hematopoietic stem cells short term culture	blood
14	chr6:82569600-82571600	Enhancers	Osteobl	bone
15	chr6:82569800-82570000	Enhancers	NHDF-Ad	bronchial

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