Variant report

Variant	rs1931644
Chromosome Location	chr6:82579675-82579676
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 17 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:16)

rs_ID	r²[population]
rs13197670	0.96[AFR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13212198	0.95[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs13212500	0.96[EUR][1000 genomes]
rs16893572	0.95[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs16893614	0.96[EUR][1000 genomes]
rs1931646	0.98[AFR][1000 genomes];0.95[AMR][1000 genomes];0.96[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs1999630	0.87[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs34411814	0.87[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs34663254	0.98[AFR][1000 genomes];0.91[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs34723068	0.87[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs35392002	0.95[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs35419006	0.87[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs35538583	0.98[AFR][1000 genomes];0.95[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4476879	0.82[EUR][1000 genomes]
rs66652550	0.98[AFR][1000 genomes];0.95[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs67263687	0.91[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv830712	chr6:82491029-82654531	Enhancers Flanking Active TSS Weak transcription Active TSS Bivalent Enhancer ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:5 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:82579000-82580400	Enhancers	HepG2	liver
2	chr6:82579200-82579800	Enhancers	ES-I3 Cell Line	embryonic stem cell
3	chr6:82579200-82580000	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
4	chr6:82579200-82580200	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
5	chr6:82579400-82579800	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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