Variant report

Variant	rs34723068
Chromosome Location	chr6:82537954-82537955
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr6:82535510..82539999-chr6:82542680..82545257,3	MCF-7	breast:

Extended variants
information (count: 34 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:33)

rs_ID	r²[population]
rs1034241	0.88[EUR][1000 genomes]
rs11961442	0.89[EUR][1000 genomes]
rs11969940	0.89[EUR][1000 genomes]
rs13197670	0.91[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs13212198	0.93[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs13212500	0.81[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs13214556	0.82[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs16893463	0.81[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs16893491	0.82[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs16893518	0.89[EUR][1000 genomes]
rs16893523	0.86[EUR][1000 genomes]
rs16893524	0.91[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs16893526	0.91[AMR][1000 genomes];0.91[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs16893572	0.86[AFR][1000 genomes];0.81[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs16893614	0.91[EUR][1000 genomes]
rs1931644	0.87[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs1931646	0.91[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs194618	0.88[EUR][1000 genomes]
rs194620	0.88[EUR][1000 genomes]
rs1999630	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs34411814	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs34663254	0.91[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs34696161	0.86[EUR][1000 genomes]
rs35039823	0.84[EUR][1000 genomes]
rs35392002	0.86[AFR][1000 genomes];0.81[AMR][1000 genomes];0.93[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs35419006	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs35538583	0.91[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs4476879	0.85[AFR][1000 genomes];0.95[AMR][1000 genomes];0.95[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs56021267	0.82[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs6454240	0.88[EUR][1000 genomes]
rs66652550	0.91[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs67263687	0.86[EUR][1000 genomes]
rs72899496	0.81[AMR][1000 genomes];0.86[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv830712	chr6:82491029-82654531	Enhancers Flanking Active TSS Weak transcription Active TSS Bivalent Enhancer ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:3 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:82529400-82544000	Weak transcription	Right Atrium	heart
2	chr6:82537600-82541400	Weak transcription	Sigmoid Colon	Sigmoid Colon
3	chr6:82537600-82543400	Weak transcription	Muscle Satellite Cultured Cells	--

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