Variant report

Variant	rs16893526
Chromosome Location	chr6:82515315-82515316
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr6:82462188..82464622-chr6:82513925..82516932,3	MCF-7	breast:

Variant related genes	Relation type
ENSG00000112773	Chromatin interaction

Extended variants
information (count: 36 )
Associated
traits (count: 1 )

rSNPs within LD-proxies of this variant (count:35)

rs_ID	r²[population]
rs1034241	0.92[CEU][hapmap];1.00[GIH][hapmap];0.86[MEX][hapmap];0.94[TSI][hapmap];0.96[EUR][1000 genomes]
rs11961442	0.98[EUR][1000 genomes]
rs11969940	0.98[EUR][1000 genomes]
rs13192697	0.87[EUR][1000 genomes]
rs13197670	0.83[EUR][1000 genomes]
rs13212198	0.84[EUR][1000 genomes]
rs13212500	0.81[AMR][1000 genomes]
rs13214556	1.00[CEU][hapmap];1.00[JPT][hapmap];0.82[AMR][1000 genomes];0.98[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs16893463	0.81[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs16893491	1.00[CEU][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];1.00[MEX][hapmap];0.94[TSI][hapmap];0.82[AMR][1000 genomes];0.98[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs16893518	1.00[CEU][hapmap];0.90[JPT][hapmap];0.98[EUR][1000 genomes]
rs16893523	0.95[EUR][1000 genomes]
rs16893524	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs16893572	0.81[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs16893614	0.83[EUR][1000 genomes]
rs1931646	0.83[EUR][1000 genomes]
rs194618	0.91[CEU][hapmap];0.96[EUR][1000 genomes]
rs194620	0.96[EUR][1000 genomes]
rs1999630	0.91[AMR][1000 genomes];0.91[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs34411814	0.91[AMR][1000 genomes];0.91[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs34663254	0.83[EUR][1000 genomes]
rs34696161	0.95[EUR][1000 genomes]
rs34723068	0.91[AMR][1000 genomes];0.91[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs35039823	0.93[EUR][1000 genomes]
rs35392002	0.81[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs35419006	0.91[AMR][1000 genomes];0.91[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs35538583	0.83[EUR][1000 genomes]
rs4476879	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.90[AFR][1000 genomes];0.95[AMR][1000 genomes];0.89[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs56021267	0.82[AMR][1000 genomes];1.00[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs6454240	1.00[CEU][hapmap];0.85[GIH][hapmap];0.90[JPT][hapmap];0.83[TSI][hapmap];0.96[EUR][1000 genomes]
rs66652550	0.83[EUR][1000 genomes]
rs72899496	0.81[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs9341901	0.80[YRI][hapmap]
rs9344225	0.80[YRI][hapmap]
rs9353031	0.80[YRI][hapmap]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv830712	chr6:82491029-82654531	Enhancers Flanking Active TSS Weak transcription Active TSS Bivalent Enhancer ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases

Variant related diseases (count:1)

Disease	PMID	Source
Coronary heart disease	21606135	GWAS catalog

Chromatin state (count:2 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:82509600-82516600	Weak transcription	Stomach Mucosa	stomach
2	chr6:82513000-82517800	Weak transcription	Ovary	ovary

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