Variant report

Variant	rs1931646
Chromosome Location	chr6:82588292-82588293
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 29 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:28)

rs_ID	r²[population]
rs1034241	0.92[CEU][hapmap];0.94[GIH][hapmap];0.89[TSI][hapmap]
rs11961442	0.81[EUR][1000 genomes]
rs11969940	0.81[EUR][1000 genomes]
rs13197670	0.98[AFR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs13212198	0.98[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs13212500	0.93[EUR][1000 genomes]
rs13214556	1.00[CEU][hapmap];0.90[JPT][hapmap];0.81[EUR][1000 genomes]
rs16893463	0.81[EUR][1000 genomes]
rs16893491	1.00[CEU][hapmap];0.94[GIH][hapmap];0.90[JPT][hapmap];0.85[MEX][hapmap];0.89[TSI][hapmap];0.81[EUR][1000 genomes]
rs16893518	1.00[CEU][hapmap];0.80[JPT][hapmap];0.81[EUR][1000 genomes]
rs16893524	0.83[EUR][1000 genomes]
rs16893526	1.00[CEU][hapmap];0.88[CHD][hapmap];0.94[GIH][hapmap];0.90[JPT][hapmap];0.85[MEX][hapmap];0.94[TSI][hapmap];0.83[EUR][1000 genomes]
rs16893572	0.98[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs16893614	1.00[EUR][1000 genomes]
rs1931644	0.98[AFR][1000 genomes];0.95[AMR][1000 genomes];0.96[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs194618	0.91[CEU][hapmap]
rs1999630	0.91[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs34411814	0.91[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs34663254	1.00[AFR][1000 genomes];0.95[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs34723068	0.91[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs35392002	0.98[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs35419006	0.91[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs35538583	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs4476879	1.00[CEU][hapmap];0.90[JPT][hapmap];0.86[EUR][1000 genomes]
rs56021267	0.83[EUR][1000 genomes]
rs6454240	1.00[CEU][hapmap];0.80[JPT][hapmap]
rs66652550	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs67263687	0.95[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv830712	chr6:82491029-82654531	Enhancers Flanking Active TSS Weak transcription Active TSS Bivalent Enhancer ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:82587600-82588600	Enhancers	Placenta Amnion	Placenta Amnion

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