Variant report

Variant	rs16893572
Chromosome Location	chr6:82547535-82547536
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr6:82538666..82540354-chr6:82546109..82548246,2	MCF-7	breast:

Extended variants
information (count: 31 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:30)

rs_ID	r²[population]
rs1034241	0.92[CEU][hapmap];0.81[EUR][1000 genomes]
rs11961442	0.83[EUR][1000 genomes]
rs11969940	0.83[EUR][1000 genomes]
rs13197670	0.83[AMR][1000 genomes];0.98[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs13212198	1.00[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs13212500	1.00[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs13214556	1.00[CEU][hapmap];1.00[JPT][hapmap];0.83[EUR][1000 genomes]
rs16893463	0.89[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs16893491	1.00[CEU][hapmap];1.00[JPT][hapmap];0.83[EUR][1000 genomes]
rs16893518	1.00[CEU][hapmap];0.90[JPT][hapmap];0.83[EUR][1000 genomes]
rs16893524	0.81[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs16893526	1.00[CEU][hapmap];1.00[JPT][hapmap];0.88[YRI][hapmap];0.81[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs16893614	0.98[EUR][1000 genomes]
rs1931644	0.95[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs1931646	0.98[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs194618	0.84[CEU][hapmap];0.81[EUR][1000 genomes]
rs194620	0.81[EUR][1000 genomes]
rs1999630	0.81[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs34411814	0.83[AFR][1000 genomes];0.81[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs34663254	0.98[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs34723068	0.86[AFR][1000 genomes];0.81[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs35392002	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs35419006	0.86[AFR][1000 genomes];0.81[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs35538583	0.98[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs4476879	1.00[CEU][hapmap];1.00[JPT][hapmap];0.85[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs56021267	0.84[EUR][1000 genomes]
rs6454240	1.00[CEU][hapmap];0.90[JPT][hapmap];0.81[EUR][1000 genomes]
rs66652550	0.98[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs67263687	0.93[EUR][1000 genomes]
rs72899496	0.89[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv830712	chr6:82491029-82654531	Enhancers Flanking Active TSS Weak transcription Active TSS Bivalent Enhancer ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:15 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:82544000-82547800	Weak transcription	Aorta	Aorta
2	chr6:82544200-82547600	Weak transcription	Fetal Lung	lung
3	chr6:82544400-82547600	Weak transcription	Duodenum Mucosa	Duodenum
4	chr6:82544400-82547600	Weak transcription	HepG2	liver
5	chr6:82544400-82548000	Weak transcription	A549	lung
6	chr6:82544600-82547800	Weak transcription	Hela-S3	cervix
7	chr6:82544600-82548000	Weak transcription	NH-A	brain
8	chr6:82544600-82548600	Weak transcription	Placenta Amnion	Placenta Amnion
9	chr6:82544600-82552000	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
10	chr6:82547000-82547600	Enhancers	Rectal Mucosa Donor 31	rectum
11	chr6:82547000-82548800	Enhancers	Fetal Intestine Large	intestine
12	chr6:82547000-82550600	Enhancers	Stomach Mucosa	stomach
13	chr6:82547200-82548400	Enhancers	Fetal Heart	heart
14	chr6:82547200-82549000	Enhancers	Fetal Intestine Small	intestine
15	chr6:82547400-82549800	Enhancers	Pancreatic Islets	Pancreatic Islet

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