Variant report

Variant	rs16893518
Chromosome Location	chr6:82499984-82499985
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr6:82459273..82465478-chr6:82493760..82501805,11	MCF-7	breast:
2	chr6:82497950..82501733-chr6:82505295..82508156,3	MCF-7	breast:
3	chr6:82498347..82500679-chr6:82501135..82504040,2	K562	blood:

Variant related genes	Relation type
ENSG00000112773	Chromatin interaction

Extended variants
information (count: 32 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:31)

rs_ID	r²[population]
rs1034241	0.92[CEU][hapmap];0.95[EUR][1000 genomes]
rs11961442	0.92[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs11969940	0.94[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs13192697	0.85[AFR][1000 genomes];0.92[AMR][1000 genomes];0.88[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs13197670	0.81[EUR][1000 genomes]
rs13212198	0.83[EUR][1000 genomes]
rs13214556	1.00[CEU][hapmap];0.93[CHB][hapmap];0.90[JPT][hapmap];0.96[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs16893463	0.96[EUR][1000 genomes]
rs16893491	1.00[CEU][hapmap];1.00[CHB][hapmap];0.90[JPT][hapmap];0.96[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs16893523	0.92[AMR][1000 genomes];0.97[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs16893524	0.98[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs16893526	1.00[CEU][hapmap];0.90[JPT][hapmap];0.98[EUR][1000 genomes]
rs16893572	0.83[EUR][1000 genomes]
rs16893614	0.81[EUR][1000 genomes]
rs1931646	0.81[EUR][1000 genomes]
rs194618	0.84[CEU][hapmap];0.95[EUR][1000 genomes]
rs194620	0.95[EUR][1000 genomes]
rs1999630	0.89[EUR][1000 genomes]
rs34411814	0.89[EUR][1000 genomes]
rs34663254	0.81[EUR][1000 genomes]
rs34696161	0.88[AMR][1000 genomes];0.96[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs34723068	0.89[EUR][1000 genomes]
rs35039823	0.91[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs35392002	0.83[EUR][1000 genomes]
rs35419006	0.89[EUR][1000 genomes]
rs35538583	0.81[EUR][1000 genomes]
rs4476879	1.00[CEU][hapmap];0.90[JPT][hapmap];0.88[EUR][1000 genomes]
rs56021267	0.98[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs6454240	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.94[YRI][hapmap];0.99[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs66652550	0.81[EUR][1000 genomes]
rs72899496	0.93[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv830712	chr6:82491029-82654531	Enhancers Flanking Active TSS Weak transcription Active TSS Bivalent Enhancer ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:22 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:82496000-82500600	Enhancers	HUES64 Cell Line	embryonic stem cell
2	chr6:82496200-82500000	Enhancers	HepG2	liver
3	chr6:82497400-82500000	Enhancers	Fetal Intestine Large	intestine
4	chr6:82497800-82503200	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
5	chr6:82498200-82500000	Enhancers	Fetal Intestine Small	intestine
6	chr6:82498400-82500600	Enhancers	ES-I3 Cell Line	embryonic stem cell
7	chr6:82498400-82501000	Enhancers	H1 Cell Line	embryonic stem cell
8	chr6:82498600-82500000	Enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
9	chr6:82498600-82500800	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
10	chr6:82499000-82501400	Weak transcription	HUVEC	blood vessel
11	chr6:82499000-82502400	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
12	chr6:82499000-82503200	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
13	chr6:82499200-82500000	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
14	chr6:82499200-82500600	Enhancers	iPS-15b Cell Line	embryonic stem cell
15	chr6:82499600-82500200	Flanking Active TSS	HUES48 Cell Line	embryonic stem cell
16	chr6:82499600-82500200	Flanking Active TSS	iPS-18 Cell Line	embryonic stem cell
17	chr6:82499800-82500000	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
18	chr6:82499800-82500000	Enhancers	iPS-20b Cell Line	embryonic stem cell
19	chr6:82499800-82500000	Enhancers	Sigmoid Colon	Sigmoid Colon
20	chr6:82499800-82500600	Weak transcription	H9 Cell Line	embryonic stem cell
21	chr6:82499800-82500800	Weak transcription	HUES6 Cell Line	embryonic stem cell
22	chr6:82499800-82503000	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell

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