Variant report

Variant	rs16893523
Chromosome Location	chr6:82504179-82504180
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 33 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:32)

rs_ID	r²[population]
rs1034241	0.85[CEU][hapmap];0.85[GIH][hapmap];0.89[TSI][hapmap];0.91[EUR][1000 genomes]
rs11961442	0.88[AFR][1000 genomes];0.96[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11969940	0.91[AFR][1000 genomes];0.98[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13192697	0.84[AMR][1000 genomes];0.85[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs13214556	0.92[CEU][hapmap];0.92[CHB][hapmap];0.90[JPT][hapmap];0.93[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs16893463	0.93[EUR][1000 genomes]
rs16893491	0.92[CEU][hapmap];1.00[CHB][hapmap];0.94[CHD][hapmap];0.85[GIH][hapmap];0.90[JPT][hapmap];0.89[TSI][hapmap];0.93[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs16893518	0.92[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.92[AMR][1000 genomes];0.97[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs16893524	0.95[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs16893526	0.92[CEU][hapmap];0.85[GIH][hapmap];0.90[JPT][hapmap];0.94[TSI][hapmap];0.95[EUR][1000 genomes]
rs1931626	0.93[LWK][hapmap]
rs1931627	0.91[YRI][hapmap]
rs1931628	0.81[AFR][1000 genomes]
rs1931629	0.91[YRI][hapmap];0.81[AFR][1000 genomes]
rs194618	0.82[CEU][hapmap];0.91[EUR][1000 genomes]
rs194620	0.91[EUR][1000 genomes]
rs1999630	0.86[EUR][1000 genomes]
rs34411814	0.86[EUR][1000 genomes]
rs34696161	0.93[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs34723068	0.86[EUR][1000 genomes]
rs35039823	0.88[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs35419006	0.86[EUR][1000 genomes]
rs4476879	0.92[CEU][hapmap];0.90[JPT][hapmap];0.85[EUR][1000 genomes]
rs56021267	0.95[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs6454240	0.92[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];1.00[MEX][hapmap];0.89[TSI][hapmap];0.92[AMR][1000 genomes];0.95[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs6925561	0.91[YRI][hapmap];0.81[AFR][1000 genomes]
rs72899496	0.90[EUR][1000 genomes]
rs9341901	0.81[YRI][hapmap]
rs9344224	0.91[YRI][hapmap]
rs9344225	0.93[LWK][hapmap];0.85[MKK][hapmap];0.81[YRI][hapmap]
rs9353030	0.93[LWK][hapmap];0.91[YRI][hapmap];0.81[AFR][1000 genomes]
rs9353031	0.81[YRI][hapmap]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv830712	chr6:82491029-82654531	Enhancers Flanking Active TSS Weak transcription Active TSS Bivalent Enhancer ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:7 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:82500800-82507400	Weak transcription	iPS-18 Cell Line	embryonic stem cell
2	chr6:82502200-82504800	Enhancers	Primary monocytes fromperipheralblood	blood
3	chr6:82502200-82506600	Weak transcription	HUVEC	blood vessel
4	chr6:82503000-82506800	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
5	chr6:82503200-82504400	Flanking Active TSS	Monocytes-CD14+_RO01746	blood
6	chr6:82503200-82507200	Weak transcription	Primary hematopoietic stem cells short term culture	blood
7	chr6:82503600-82504400	Enhancers	Primary neutrophils fromperipheralblood	blood

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