Variant report

Variant	rs9353030
Chromosome Location	chr6:82521379-82521380
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr6:82462237..82465542-chr6:82518745..82522401,4	MCF-7	breast:
2	chr6:82519114..82521777-chr6:82521792..82524425,2	MCF-7	breast:

Variant related genes	Relation type
ENSG00000112773	Chromatin interaction
ENSG00000224995	Chromatin interaction

Extended variants
information (count: 14 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:13)

rs_ID	r²[population]
rs11961442	0.81[AFR][1000 genomes]
rs11969940	0.81[AFR][1000 genomes]
rs16893523	0.81[AFR][1000 genomes]
rs1931626	1.00[ASW][hapmap];1.00[CEU][hapmap];0.89[CHB][hapmap];0.82[CHD][hapmap];0.80[JPT][hapmap];1.00[LWK][hapmap];1.00[MEX][hapmap];1.00[MKK][hapmap];1.00[TSI][hapmap];0.82[YRI][hapmap];0.97[AFR][1000 genomes];0.96[AMR][1000 genomes];0.95[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs1931627	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1931628	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1931629	1.00[CEU][hapmap];1.00[CHB][hapmap];0.94[JPT][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs194612	0.83[CEU][hapmap]
rs6925561	1.00[CEU][hapmap];0.89[CHB][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];0.96[AMR][1000 genomes];0.97[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs9341901	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.91[YRI][hapmap];0.99[AFR][1000 genomes];1.00[AMR][1000 genomes];0.95[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs9344224	1.00[CEU][hapmap];0.89[CHB][hapmap];0.80[JPT][hapmap];1.00[YRI][hapmap];0.96[AFR][1000 genomes];0.96[AMR][1000 genomes];0.94[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs9344225	1.00[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];0.85[GIH][hapmap];1.00[JPT][hapmap];1.00[LWK][hapmap];0.90[MEX][hapmap];0.85[MKK][hapmap];1.00[TSI][hapmap];0.91[YRI][hapmap];0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];0.95[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs9353031	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.91[YRI][hapmap];0.99[AFR][1000 genomes];1.00[AMR][1000 genomes];0.95[EUR][1000 genomes];0.99[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv830712	chr6:82491029-82654531	Enhancers Flanking Active TSS Weak transcription Active TSS Bivalent Enhancer ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:23 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:82517200-82530600	Weak transcription	Sigmoid Colon	Sigmoid Colon
2	chr6:82517600-82522400	Weak transcription	HepG2	liver
3	chr6:82518800-82521400	Enhancers	Colon Smooth Muscle	Colon
4	chr6:82518800-82522400	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
5	chr6:82518800-82524200	Weak transcription	NHLF	lung
6	chr6:82519200-82523000	Weak transcription	Adipose Nuclei	Adipose
7	chr6:82519200-82524200	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
8	chr6:82519200-82524200	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
9	chr6:82519200-82524200	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
10	chr6:82519200-82528800	Weak transcription	Rectal Mucosa Donor 31	rectum
11	chr6:82519400-82522400	Weak transcription	Rectal Mucosa Donor 29	rectum
12	chr6:82519400-82524200	Weak transcription	Osteobl	bone
13	chr6:82519600-82522000	Enhancers	Primary monocytes fromperipheralblood	blood
14	chr6:82519600-82522000	Enhancers	Primary hematopoietic stem cells	blood
15	chr6:82519800-82521800	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
16	chr6:82520000-82521600	Weak transcription	Primary neutrophils fromperipheralblood	blood
17	chr6:82520000-82522000	Enhancers	Primary hematopoietic stem cells short term culture	blood
18	chr6:82520000-82522000	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
19	chr6:82520400-82521400	Enhancers	Fetal Adrenal Gland	Adrenal Gland
20	chr6:82520400-82521800	Weak transcription	Primary B cells from cord blood	blood
21	chr6:82520600-82521600	Enhancers	Monocytes-CD14+_RO01746	blood
22	chr6:82520600-82522000	Weak transcription	Primary B cells from peripheral blood	blood
23	chr6:82521000-82521400	Enhancers	Ovary	ovary

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