Variant report

Variant	rs1931628
Chromosome Location	chr6:82520529-82520530
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr6:82462237..82465542-chr6:82518745..82522401,4	MCF-7	breast:
2	chr6:82519114..82521777-chr6:82521792..82524425,2	MCF-7	breast:
3	chr6:82515412..82518371-chr6:82518489..82521368,3	MCF-7	breast:

Variant related genes	Relation type
ENSG00000112773	Chromatin interaction
ENSG00000224995	Chromatin interaction

Extended variants
information (count: 13 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:12)

rs_ID	r²[population]
rs11961442	0.81[AFR][1000 genomes]
rs11969940	0.81[AFR][1000 genomes]
rs16893523	0.81[AFR][1000 genomes]
rs1931626	0.97[AFR][1000 genomes];0.96[AMR][1000 genomes];0.95[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs1931627	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1931629	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6925561	1.00[AFR][1000 genomes];0.96[AMR][1000 genomes];0.97[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs9341901	0.99[AFR][1000 genomes];1.00[AMR][1000 genomes];0.95[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs9344224	0.96[AFR][1000 genomes];0.96[AMR][1000 genomes];0.94[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs9344225	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];0.95[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs9353030	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9353031	0.99[AFR][1000 genomes];1.00[AMR][1000 genomes];0.95[EUR][1000 genomes];0.99[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv830712	chr6:82491029-82654531	Enhancers Flanking Active TSS Weak transcription Active TSS Bivalent Enhancer ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:24 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:82517200-82530600	Weak transcription	Sigmoid Colon	Sigmoid Colon
2	chr6:82517600-82522400	Weak transcription	HepG2	liver
3	chr6:82517800-82520600	Flanking Active TSS	Monocytes-CD14+_RO01746	blood
4	chr6:82518800-82521400	Enhancers	Colon Smooth Muscle	Colon
5	chr6:82518800-82522400	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
6	chr6:82518800-82524200	Weak transcription	NHLF	lung
7	chr6:82519200-82523000	Weak transcription	Adipose Nuclei	Adipose
8	chr6:82519200-82524200	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
9	chr6:82519200-82524200	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
10	chr6:82519200-82524200	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
11	chr6:82519200-82528800	Weak transcription	Rectal Mucosa Donor 31	rectum
12	chr6:82519400-82520600	Enhancers	Primary B cells from peripheral blood	blood
13	chr6:82519400-82520600	Enhancers	HUVEC	blood vessel
14	chr6:82519400-82522400	Weak transcription	Rectal Mucosa Donor 29	rectum
15	chr6:82519400-82524200	Weak transcription	Osteobl	bone
16	chr6:82519600-82522000	Enhancers	Primary monocytes fromperipheralblood	blood
17	chr6:82519600-82522000	Enhancers	Primary hematopoietic stem cells	blood
18	chr6:82519800-82521000	Weak transcription	Ovary	ovary
19	chr6:82519800-82521800	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
20	chr6:82520000-82521600	Weak transcription	Primary neutrophils fromperipheralblood	blood
21	chr6:82520000-82522000	Enhancers	Primary hematopoietic stem cells short term culture	blood
22	chr6:82520000-82522000	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
23	chr6:82520400-82521400	Enhancers	Fetal Adrenal Gland	Adrenal Gland
24	chr6:82520400-82521800	Weak transcription	Primary B cells from cord blood	blood

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links