Variant report

Variant	rs1931626
Chromosome Location	chr6:82523341-82523342
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 13 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:12)

rs_ID	r²[population]
rs11961442	0.81[AFR][1000 genomes]
rs11969940	0.81[AFR][1000 genomes]
rs1931627	1.00[CEU][hapmap];0.89[CHB][hapmap];0.80[JPT][hapmap];0.82[YRI][hapmap];0.94[AFR][1000 genomes];0.96[AMR][1000 genomes];0.95[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs1931628	0.97[AFR][1000 genomes];0.96[AMR][1000 genomes];0.95[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs1931629	1.00[CEU][hapmap];0.89[CHB][hapmap];0.82[YRI][hapmap];0.97[AFR][1000 genomes];0.96[AMR][1000 genomes];0.95[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs194612	0.83[CEU][hapmap]
rs6925561	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.82[YRI][hapmap];0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];0.96[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs9341901	1.00[CEU][hapmap];0.89[CHB][hapmap];0.80[JPT][hapmap];0.91[YRI][hapmap];0.99[AFR][1000 genomes];0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs9344224	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.82[YRI][hapmap];0.93[AFR][1000 genomes];1.00[AMR][1000 genomes];0.89[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs9344225	1.00[ASW][hapmap];1.00[CEU][hapmap];0.89[CHB][hapmap];0.82[CHD][hapmap];0.94[GIH][hapmap];0.80[JPT][hapmap];1.00[LWK][hapmap];0.90[MEX][hapmap];0.85[MKK][hapmap];1.00[TSI][hapmap];0.91[YRI][hapmap];0.97[AFR][1000 genomes];0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs9353030	1.00[ASW][hapmap];1.00[CEU][hapmap];0.89[CHB][hapmap];0.82[CHD][hapmap];0.80[JPT][hapmap];1.00[LWK][hapmap];1.00[MEX][hapmap];1.00[MKK][hapmap];1.00[TSI][hapmap];0.82[YRI][hapmap];0.97[AFR][1000 genomes];0.96[AMR][1000 genomes];0.95[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs9353031	1.00[CEU][hapmap];0.89[CHB][hapmap];0.80[JPT][hapmap];0.91[YRI][hapmap];0.99[AFR][1000 genomes];0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];0.90[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv830712	chr6:82491029-82654531	Enhancers Flanking Active TSS Weak transcription Active TSS Bivalent Enhancer ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:19 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:82517200-82530600	Weak transcription	Sigmoid Colon	Sigmoid Colon
2	chr6:82518800-82524200	Weak transcription	NHLF	lung
3	chr6:82519200-82524200	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
4	chr6:82519200-82524200	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
5	chr6:82519200-82524200	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
6	chr6:82519200-82528800	Weak transcription	Rectal Mucosa Donor 31	rectum
7	chr6:82519400-82524200	Weak transcription	Osteobl	bone
8	chr6:82521600-82524000	Flanking Active TSS	Monocytes-CD14+_RO01746	blood
9	chr6:82522000-82523400	Enhancers	Primary B cells from peripheral blood	blood
10	chr6:82522600-82523400	Enhancers	Primary hematopoietic stem cells	blood
11	chr6:82522600-82524000	Enhancers	Primary neutrophils fromperipheralblood	blood
12	chr6:82522800-82523400	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
13	chr6:82522800-82525400	Enhancers	Primary monocytes fromperipheralblood	blood
14	chr6:82522800-82531400	Enhancers	Primary hematopoietic stem cells short term culture	blood
15	chr6:82523000-82523400	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
16	chr6:82523000-82530000	Weak transcription	Rectal Mucosa Donor 29	rectum
17	chr6:82523200-82524000	Weak transcription	Adipose Nuclei	Adipose
18	chr6:82523200-82525200	Weak transcription	HepG2	liver
19	chr6:82523200-82528000	Weak transcription	Primary B cells from cord blood	blood

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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